Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67434 | Canola | nucleus | 88.46 | 81.56 |
| CDX74440 | Canola | nucleus | 76.67 | 70.52 |
| CDY30261 | Canola | nucleus | 77.18 | 68.41 |
| AT5G39660.1 | Thale cress | nucleus | 79.23 | 67.61 |
| CDY71347 | Canola | nucleus | 14.87 | 43.94 |
| CDY00286 | Canola | nucleus | 29.23 | 41.76 |
| CDY69084 | Canola | nucleus | 28.46 | 40.51 |
| CDY67518 | Canola | nucleus | 30.26 | 40.41 |
| CDY69244 | Canola | nucleus | 30.0 | 40.07 |
| CDX99791 | Canola | nucleus | 17.44 | 39.31 |
| CDX90171 | Canola | nucleus | 17.44 | 39.08 |
| CDY50789 | Canola | nucleus | 17.44 | 38.86 |
| CDY43321 | Canola | nucleus | 17.18 | 38.51 |
| CDY37670 | Canola | nucleus | 16.15 | 37.5 |
| CDY15647 | Canola | nucleus | 16.92 | 37.29 |
| CDY67393 | Canola | nucleus | 15.9 | 36.47 |
| KRH01188 | Soybean | nucleus | 44.1 | 34.33 |
| KRH40083 | Soybean | nucleus | 44.1 | 34.19 |
| Solyc05g007880.2.1 | Tomato | nucleus | 36.67 | 32.43 |
| PGSC0003DMT400047370 | Potato | nucleus | 36.67 | 32.35 |
| CDX95919 | Canola | nucleus | 29.74 | 31.52 |
| CDY72477 | Canola | nucleus | 29.23 | 30.98 |
| CDY16193 | Canola | nucleus | 25.9 | 30.89 |
| CDY01768 | Canola | nucleus | 28.97 | 30.71 |
| CDY56923 | Canola | nucleus | 14.36 | 30.11 |
| CDY47405 | Canola | nucleus | 33.08 | 30.07 |
| CDY66672 | Canola | nucleus | 32.56 | 29.74 |
| CDY67869 | Canola | nucleus | 28.72 | 29.09 |
| CDY07344 | Canola | nucleus | 28.72 | 29.02 |
| CDY51457 | Canola | nucleus | 14.1 | 28.8 |
| CDY50735 | Canola | extracellular | 26.67 | 28.57 |
| CDY50734 | Canola | nucleus | 19.49 | 28.04 |
| CDY43923 | Canola | nucleus | 11.54 | 27.95 |
| CDY37299 | Canola | nucleus | 14.1 | 27.5 |
| CDY32420 | Canola | nucleus | 14.36 | 27.18 |
| CDY48879 | Canola | nucleus | 14.36 | 27.18 |
| GSMUA_Achr11P... | Banana | nucleus | 32.31 | 27.04 |
| CDY69021 | Canola | nucleus | 13.59 | 26.9 |
| CDY44994 | Canola | nucleus | 18.21 | 26.3 |
| CDY52953 | Canola | nucleus | 13.08 | 26.29 |
| CDY46544 | Canola | nucleus | 13.33 | 26.0 |
| CDY20892 | Canola | nucleus | 13.33 | 25.24 |
| CDY58082 | Canola | nucleus | 13.33 | 25.24 |
| CDX75689 | Canola | nucleus, plastid | 15.64 | 25.21 |
| CDX69349 | Canola | nucleus, plastid | 15.64 | 25.21 |
| CDY46443 | Canola | nucleus | 21.28 | 24.78 |
| CDX87836 | Canola | nucleus | 11.54 | 24.73 |
| CDY52832 | Canola | nucleus | 13.59 | 23.87 |
| CDY17783 | Canola | nucleus | 13.85 | 23.58 |
| CDY23010 | Canola | nucleus | 14.62 | 23.08 |
| CDY02086 | Canola | nucleus | 14.1 | 22.73 |
| CDY17009 | Canola | nucleus | 13.33 | 22.61 |
| CDY18628 | Canola | nucleus | 12.05 | 22.17 |
| CDX83127 | Canola | nucleus | 13.33 | 22.13 |
| CDY54696 | Canola | nucleus | 13.33 | 21.85 |
| CDX81350 | Canola | nucleus | 12.31 | 21.43 |
| CDY12790 | Canola | nucleus | 11.79 | 21.0 |
| CDY01450 | Canola | nucleus | 11.79 | 20.91 |
Protein Annotations
| MapMan:15.5.1.5 | GO:A0A078HF39 | UniProt:A0A078HF39 | EnsemblPlants:CDY37010 | ProteinID:CDY37010 | ProteinID:CDY37010.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00063212001 | InterPro:IPR003851 | PFAM:PD007478 | PFAM:PF02701 |
| ScanProsite:PS01361 | PFscan:PS50884 | PANTHER:PTHR31089 | UniParc:UPI0004EF3A7C | InterPro:Znf_Dof | SEG:seg |
Description
BnaC06g12530DBnaC06g12530D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HF39]
Coordinates
chrLK032389:+:329535..331112
Molecular Weight (calculated)
42459.2 Da
IEP (calculated)
6.507
GRAVY (calculated)
-0.797
Length
390 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDPAIKLFG KTIPLPELVG VDSSSSYTEH QHQNPVQLSD SCTRDDEEMG DSGLAGEDGG DDAGFHGGGS ESEKEEKDNQ LRDESSNVTM ASSITEKTKT
101: TKATKTDEES SQNNETCSRE GKLKKPDKIL PCPRCDSMET KFCYYNNYNV NQPRHFCKRC QRYWTAGGTM RNVPVGAGRR KNKSLASHYN RHVGITSAED
201: TQKAAARTDP NLLTFGTDSV LCESMASGLN LAEKSMLNTQ TGQQEPNESV AISPLPKVPC FAGPPPPPAW PYPWNGVSWT VLPFYPPPAY WSCPGVSPGT
301: WNSSFTWMPQ PISPSGGSGP NSPTLEEAAK SSIWETLGIK KDEKADAFRG FRSSHKVKSC LSDGKLPGRR PELLANPAAL SRSANFHESS
101: TKATKTDEES SQNNETCSRE GKLKKPDKIL PCPRCDSMET KFCYYNNYNV NQPRHFCKRC QRYWTAGGTM RNVPVGAGRR KNKSLASHYN RHVGITSAED
201: TQKAAARTDP NLLTFGTDSV LCESMASGLN LAEKSMLNTQ TGQQEPNESV AISPLPKVPC FAGPPPPPAW PYPWNGVSWT VLPFYPPPAY WSCPGVSPGT
301: WNSSFTWMPQ PISPSGGSGP NSPTLEEAAK SSIWETLGIK KDEKADAFRG FRSSHKVKSC LSDGKLPGRR PELLANPAAL SRSANFHESS
001: MADPAIKLFG KTIPLPELGV VDSSSSYTGF LTETQIPVRL SDSCTGDDDD EEMGDSGLGR EEGDDVGDGG GESETDKKEE KDSECQEESL RNESNDVTTT
101: TSGITEKTET TKAAKTNEES GGTACSQEGK LKKPDKILPC PRCNSMETKF CYYNNYNVNQ PRHFCKKCQR YWTAGGTMRN VPVGAGRRKN KSPASHYNRH
201: VSITSAEAMQ KVARTDLQHP NGANLLTFGS DSVLCESMAS GLNLVEKSLL KTQTVLQEPN EGLKITVPLN QTNEEAGTVS PLPKVPCFPG PPPTWPYAWN
301: GVSWTILPFY PPPAYWSCPG VSPGAWNSFT WMPQPNSPSG SNPNSPTLGK HSRDENAAEP GTAFDETESL GREKSKPERC LWVPKTLRID DPEEAAKSSI
401: WETLGIKKDE NADTFGAFRS STKEKSSLSE GRLPGRRPEL QANPAALSRS ANFHESS
101: TSGITEKTET TKAAKTNEES GGTACSQEGK LKKPDKILPC PRCNSMETKF CYYNNYNVNQ PRHFCKKCQR YWTAGGTMRN VPVGAGRRKN KSPASHYNRH
201: VSITSAEAMQ KVARTDLQHP NGANLLTFGS DSVLCESMAS GLNLVEKSLL KTQTVLQEPN EGLKITVPLN QTNEEAGTVS PLPKVPCFPG PPPTWPYAWN
301: GVSWTILPFY PPPAYWSCPG VSPGAWNSFT WMPQPNSPSG SNPNSPTLGK HSRDENAAEP GTAFDETESL GREKSKPERC LWVPKTLRID DPEEAAKSSI
401: WETLGIKKDE NADTFGAFRS STKEKSSLSE GRLPGRRPEL QANPAALSRS ANFHESS
Arabidopsis Description
CDF2Cyclic dof factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZL5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.