Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025655.1-P | Field mustard | nucleus | 98.35 | 93.71 |
| CDY30261 | Canola | nucleus | 96.93 | 93.41 |
| CDX67434 | Canola | nucleus | 76.65 | 76.83 |
| CDY37010 | Canola | nucleus | 70.52 | 76.67 |
| AT5G39660.1 | Thale cress | nucleus | 81.6 | 75.71 |
| CDY00286 | Canola | nucleus | 30.9 | 47.99 |
| CDY67518 | Canola | nucleus | 32.55 | 47.26 |
| CDY69084 | Canola | nucleus | 30.19 | 46.72 |
| CDY69244 | Canola | nucleus | 32.08 | 46.58 |
| CDY71347 | Canola | nucleus | 14.15 | 45.45 |
| CDX99791 | Canola | nucleus | 16.51 | 40.46 |
| CDY50789 | Canola | nucleus | 16.51 | 40.0 |
| CDY43321 | Canola | nucleus | 16.27 | 39.66 |
| CDX90171 | Canola | nucleus | 16.27 | 39.66 |
| CDY15647 | Canola | nucleus | 16.04 | 38.42 |
| CDY37670 | Canola | nucleus | 15.09 | 38.1 |
| KRH01188 | Soybean | nucleus | 44.58 | 37.72 |
| CDY67393 | Canola | nucleus | 14.86 | 37.06 |
| KRH40083 | Soybean | nucleus | 43.87 | 36.98 |
| Solyc05g007880.2.1 | Tomato | nucleus | 37.26 | 35.83 |
| PGSC0003DMT400047370 | Potato | nucleus | 37.03 | 35.52 |
| CDY47405 | Canola | nucleus | 34.67 | 34.27 |
| CDY66672 | Canola | nucleus | 33.96 | 33.72 |
| CDX95919 | Canola | nucleus | 29.25 | 33.7 |
| CDY01768 | Canola | nucleus | 28.77 | 33.15 |
| CDY16193 | Canola | nucleus | 25.47 | 33.03 |
| GSMUA_Achr11P... | Banana | nucleus | 35.61 | 32.4 |
| CDY07344 | Canola | nucleus | 29.48 | 32.38 |
| CDY72477 | Canola | nucleus | 28.07 | 32.34 |
| CDY67869 | Canola | nucleus | 29.25 | 32.21 |
| CDY50735 | Canola | extracellular | 25.47 | 29.67 |
| CDY56923 | Canola | nucleus | 12.97 | 29.57 |
| CDY44994 | Canola | nucleus | 18.63 | 29.26 |
| CDY43923 | Canola | nucleus | 10.85 | 28.57 |
| CDY50734 | Canola | nucleus | 18.16 | 28.41 |
| CDY46443 | Canola | nucleus | 22.41 | 28.36 |
| CDY51457 | Canola | nucleus | 12.74 | 28.27 |
| CDY52953 | Canola | nucleus | 12.5 | 27.32 |
| CDY52832 | Canola | nucleus | 14.15 | 27.03 |
| CDY46544 | Canola | nucleus | 12.74 | 27.0 |
| CDY37299 | Canola | nucleus | 12.74 | 27.0 |
| CDY48879 | Canola | nucleus | 12.97 | 26.7 |
| CDY32420 | Canola | nucleus | 12.97 | 26.7 |
| CDX69349 | Canola | nucleus, plastid | 15.09 | 26.45 |
| CDX75689 | Canola | nucleus, plastid | 15.09 | 26.45 |
| CDY69021 | Canola | nucleus | 12.26 | 26.4 |
| CDY58082 | Canola | nucleus | 12.74 | 26.21 |
| CDY20892 | Canola | nucleus | 12.74 | 26.21 |
| CDY17783 | Canola | nucleus | 13.92 | 25.76 |
| CDX87836 | Canola | nucleus | 10.85 | 25.27 |
| CDY02086 | Canola | nucleus | 14.39 | 25.21 |
| CDY18628 | Canola | nucleus | 12.5 | 25.0 |
| CDY54696 | Canola | nucleus | 13.92 | 24.79 |
| CDY23010 | Canola | nucleus | 14.39 | 24.7 |
| CDX83127 | Canola | nucleus | 13.68 | 24.68 |
| CDX81350 | Canola | nucleus | 12.74 | 24.11 |
| CDY12790 | Canola | nucleus | 12.03 | 23.29 |
| CDY01450 | Canola | nucleus | 12.03 | 23.18 |
| CDY17009 | Canola | nucleus | 12.5 | 23.04 |
Protein Annotations
| MapMan:15.5.1.5 | GO:A0A078CCA0 | EnsemblPlants:CDX74440 | ProteinID:CDX74440 | ProteinID:CDX74440.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00114307001 | InterPro:IPR003851 | PFAM:PD007478 |
| PFAM:PF02701 | ScanProsite:PS01361 | PFscan:PS50884 | PANTHER:PTHR31089 | UniParc:UPI0004EEB0E3 | InterPro:Znf_Dof |
| SEG:seg | : | : | : | : | : |
Description
BnaA04g09490D
Coordinates
chrLK031801:-:317361..319412
Molecular Weight (calculated)
45484.8 Da
IEP (calculated)
5.545
GRAVY (calculated)
-0.742
Length
424 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDPAIKLFG KTIPLPELLG GDLTEQQDQN PVRLSDSCTG DDEEMGDSGL AGGDDGGCGD SESQQEEKDT ECGEESLCNE SSNVGGAASS IITEKTETTK
101: AAKTDEETSQ NGTCSQEGKL KKPDKILPCP RCNSMETKFC YYNNYNVNQP RHFCKKCQRY WTAGGTMRNV PVGAGRRKNK NPASHFNRHV TITSAEAMQK
201: AAAAARTADN GTSLLTFGSD SVLCESMASG LNLADKSMLK KTEASAGLKI TVPLNPSKEQ GGTISPLPCF PGPPPPPPPT WPYAWNGVSW TAVPFYPPPA
301: YWSYPGVSPG TWNSIAWMPQ PTSPSAGSGP NSPTLGKHSR DESVAEPGTR CLWVPKTLRI DDPEEAAKSS IWETLGIKKD EKADTFGAFR SPNKEKSSLS
401: QGRRPELQAN PAALSRSANF HESS
101: AAKTDEETSQ NGTCSQEGKL KKPDKILPCP RCNSMETKFC YYNNYNVNQP RHFCKKCQRY WTAGGTMRNV PVGAGRRKNK NPASHFNRHV TITSAEAMQK
201: AAAAARTADN GTSLLTFGSD SVLCESMASG LNLADKSMLK KTEASAGLKI TVPLNPSKEQ GGTISPLPCF PGPPPPPPPT WPYAWNGVSW TAVPFYPPPA
301: YWSYPGVSPG TWNSIAWMPQ PTSPSAGSGP NSPTLGKHSR DESVAEPGTR CLWVPKTLRI DDPEEAAKSS IWETLGIKKD EKADTFGAFR SPNKEKSSLS
401: QGRRPELQAN PAALSRSANF HESS
001: MADPAIKLFG KTIPLPELGV VDSSSSYTGF LTETQIPVRL SDSCTGDDDD EEMGDSGLGR EEGDDVGDGG GESETDKKEE KDSECQEESL RNESNDVTTT
101: TSGITEKTET TKAAKTNEES GGTACSQEGK LKKPDKILPC PRCNSMETKF CYYNNYNVNQ PRHFCKKCQR YWTAGGTMRN VPVGAGRRKN KSPASHYNRH
201: VSITSAEAMQ KVARTDLQHP NGANLLTFGS DSVLCESMAS GLNLVEKSLL KTQTVLQEPN EGLKITVPLN QTNEEAGTVS PLPKVPCFPG PPPTWPYAWN
301: GVSWTILPFY PPPAYWSCPG VSPGAWNSFT WMPQPNSPSG SNPNSPTLGK HSRDENAAEP GTAFDETESL GREKSKPERC LWVPKTLRID DPEEAAKSSI
401: WETLGIKKDE NADTFGAFRS STKEKSSLSE GRLPGRRPEL QANPAALSRS ANFHESS
101: TSGITEKTET TKAAKTNEES GGTACSQEGK LKKPDKILPC PRCNSMETKF CYYNNYNVNQ PRHFCKKCQR YWTAGGTMRN VPVGAGRRKN KSPASHYNRH
201: VSITSAEAMQ KVARTDLQHP NGANLLTFGS DSVLCESMAS GLNLVEKSLL KTQTVLQEPN EGLKITVPLN QTNEEAGTVS PLPKVPCFPG PPPTWPYAWN
301: GVSWTILPFY PPPAYWSCPG VSPGAWNSFT WMPQPNSPSG SNPNSPTLGK HSRDENAAEP GTAFDETESL GREKSKPERC LWVPKTLRID DPEEAAKSSI
401: WETLGIKKDE NADTFGAFRS STKEKSSLSE GRLPGRRPEL QANPAALSRS ANFHESS
Arabidopsis Description
CDF2Cyclic dof factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZL5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.