Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012901.1-P | Field mustard | nucleus | 97.93 | 97.93 |
| CDY23010 | Canola | nucleus | 94.63 | 92.71 |
| CDY17783 | Canola | nucleus | 76.45 | 80.79 |
| CDY54696 | Canola | nucleus | 79.34 | 80.67 |
| CDX83127 | Canola | nucleus | 77.69 | 80.0 |
| CDY52832 | Canola | nucleus | 72.73 | 79.28 |
| AT3G50410.1 | Thale cress | nucleus | 77.69 | 74.31 |
| CDY18628 | Canola | nucleus | 54.55 | 62.26 |
| CDY01450 | Canola | nucleus | 54.96 | 60.45 |
| CDY12790 | Canola | nucleus | 54.55 | 60.27 |
| CDX81350 | Canola | nucleus | 54.55 | 58.93 |
| KRH70017 | Soybean | nucleus | 52.48 | 54.27 |
| KRH08373 | Soybean | nucleus | 51.24 | 52.54 |
| CDY20892 | Canola | nucleus | 32.64 | 38.35 |
| CDY56923 | Canola | nucleus | 29.34 | 38.17 |
| CDY58082 | Canola | nucleus | 32.23 | 37.86 |
| CDY51457 | Canola | nucleus | 28.93 | 36.65 |
| CDY69021 | Canola | nucleus | 28.51 | 35.03 |
| CDY43923 | Canola | nucleus | 23.14 | 34.78 |
| CDY52953 | Canola | nucleus | 27.69 | 34.54 |
| CDX87836 | Canola | nucleus | 25.62 | 34.07 |
| CDY37299 | Canola | nucleus | 28.1 | 34.0 |
| CDY46544 | Canola | nucleus | 27.69 | 33.5 |
| CDY48879 | Canola | nucleus | 28.51 | 33.5 |
| CDY32420 | Canola | nucleus | 28.51 | 33.5 |
| CDY17009 | Canola | nucleus | 31.82 | 33.48 |
| CDY71347 | Canola | nucleus | 18.18 | 33.33 |
| TraesCS3D01G108600.1 | Wheat | nucleus | 31.41 | 33.04 |
| TraesCS3B01G125100.1 | Wheat | nucleus | 30.99 | 32.61 |
| KXG31638 | Sorghum | nucleus | 30.99 | 31.91 |
| Zm00001d039482_P001 | Maize | nucleus | 30.17 | 31.6 |
| TraesCS3A01G106500.1 | Wheat | nucleus | 30.99 | 31.51 |
| CDX99791 | Canola | nucleus | 20.25 | 28.32 |
| CDY50789 | Canola | nucleus | 20.25 | 28.0 |
| CDY43321 | Canola | nucleus | 19.42 | 27.01 |
| CDX90171 | Canola | nucleus | 19.42 | 27.01 |
| CDX69349 | Canola | nucleus, plastid | 26.03 | 26.03 |
| CDY15647 | Canola | nucleus | 19.01 | 25.99 |
| CDY37670 | Canola | nucleus | 17.36 | 25.0 |
| CDX75689 | Canola | nucleus, plastid | 24.79 | 24.79 |
| CDY67393 | Canola | nucleus | 17.36 | 24.71 |
| CDY69244 | Canola | nucleus | 23.97 | 19.86 |
| CDY00286 | Canola | nucleus | 22.31 | 19.78 |
| CDY69084 | Canola | nucleus | 22.31 | 19.71 |
| CDY67518 | Canola | nucleus | 23.14 | 19.18 |
| CDY44994 | Canola | nucleus | 21.07 | 18.89 |
| CDY16193 | Canola | nucleus | 24.79 | 18.35 |
| CDY46443 | Canola | nucleus | 23.14 | 16.72 |
| CDY50734 | Canola | nucleus | 18.59 | 16.61 |
| CDY07344 | Canola | nucleus | 26.03 | 16.32 |
| CDY50735 | Canola | extracellular | 24.38 | 16.21 |
| CDY67869 | Canola | nucleus | 25.62 | 16.1 |
| CDX95919 | Canola | nucleus | 24.38 | 16.03 |
| CDY01768 | Canola | nucleus | 23.97 | 15.76 |
| CDY72477 | Canola | nucleus | 23.55 | 15.49 |
| CDY66672 | Canola | nucleus | 27.27 | 15.46 |
| CDY47405 | Canola | nucleus | 27.27 | 15.38 |
| CDX74440 | Canola | nucleus | 25.21 | 14.39 |
| CDY37010 | Canola | nucleus | 22.73 | 14.1 |
| CDX67434 | Canola | nucleus | 24.38 | 13.95 |
| CDY30261 | Canola | nucleus | 25.21 | 13.86 |
Protein Annotations
| MapMan:15.5.1.5 | GO:A0A078ELM8 | EnsemblPlants:CDY02086 | ProteinID:CDY02086 | ProteinID:CDY02086.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00113462001 | InterPro:IPR003851 | PFAM:PD007478 |
| PFAM:PF02701 | ScanProsite:PS01361 | PFscan:PS50884 | PANTHER:PTHR31992 | PANTHER:PTHR31992:SF12 | UniParc:UPI0004EF01DD |
| InterPro:Znf_Dof | SEG:seg | : | : | : | : |
Description
BnaA03g40810D
Coordinates
chrLK031932:-:49313..50041
Molecular Weight (calculated)
25465.4 Da
IEP (calculated)
7.755
GRAVY (calculated)
-0.443
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTSDSGESR RTAMRPHGGI TGLPPATEQQ EQLPCPRCDS TNTKFCYYNN YNFSQPRHFC KSCRRYWTHG GTLRDIPVGG GTRKAAKRSR TCSSSAGVLN
101: APLQATPVLF PQTSLSNGVC HAVTENDGKG SSLSLCGSFT SLLNQNGNAE SATTHGTGGF GSGLGSGFDD VSFGLGRAAW PFSTVDDAAT TNVGSNGGHH
201: AVQIPATWQF EGLESSNAGG FVPGEYFAWP DLSITTPVSS LK
101: APLQATPVLF PQTSLSNGVC HAVTENDGKG SSLSLCGSFT SLLNQNGNAE SATTHGTGGF GSGLGSGFDD VSFGLGRAAW PFSTVDDAAT TNVGSNGGHH
201: AVQIPATWQF EGLESSNAGG FVPGEYFAWP DLSITTPVSS LK
001: MPTSDSGEPR RIAMKPNGVT VPISDQQEQL PCPRCDSSNT KFCYYNNYNF SQPRHFCKAC RRYWTHGGTL RDVPVGGGTR KSAKRSRTCS NSSSSSVSGV
101: VSNSNGVPLQ TTPVLFPQSS ISNGVTHTVT ESDGKGSALS LCGSFTSTLL NHNAAATATH GSGSVIGIGG FGIGLGSGFD DVSFGLGRAM WPFSTVGTAT
201: TTNVGSNGGH HAVPMPATWQ FEGLESNAGG GFVSGEYFAW PDLSITTPGN SLK
101: VSNSNGVPLQ TTPVLFPQSS ISNGVTHTVT ESDGKGSALS LCGSFTSTLL NHNAAATATH GSGSVIGIGG FGIGLGSGFD DVSFGLGRAM WPFSTVGTAT
201: TTNVGSNGGH HAVPMPATWQ FEGLESNAGG GFVSGEYFAW PDLSITTPGN SLK
Arabidopsis Description
DOF3.4OBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFT5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.