Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003994.1-P | Field mustard | nucleus | 92.73 | 92.49 |
| CDY07344 | Canola | nucleus | 92.73 | 92.49 |
| CDY01768 | Canola | nucleus | 74.55 | 77.99 |
| CDX95919 | Canola | nucleus | 74.03 | 77.45 |
| CDY72477 | Canola | nucleus | 73.51 | 76.9 |
| AT1G69570.1 | Thale cress | nucleus | 77.66 | 74.94 |
| CDY16193 | Canola | nucleus | 47.01 | 55.35 |
| CDY44994 | Canola | nucleus | 36.36 | 51.85 |
| CDY50735 | Canola | extracellular | 48.83 | 51.65 |
| CDY46443 | Canola | nucleus | 42.86 | 49.25 |
| CDY50734 | Canola | nucleus | 32.99 | 46.86 |
| CDY69084 | Canola | nucleus | 29.35 | 41.24 |
| CDY69244 | Canola | nucleus | 31.17 | 41.1 |
| CDY67518 | Canola | nucleus | 31.17 | 41.1 |
| CDY00286 | Canola | nucleus | 29.09 | 41.03 |
| CDY71347 | Canola | nucleus | 14.03 | 40.91 |
| CDY43321 | Canola | nucleus | 18.44 | 40.8 |
| CDX90171 | Canola | nucleus | 18.44 | 40.8 |
| CDX99791 | Canola | nucleus | 17.4 | 38.73 |
| CDY50789 | Canola | nucleus | 17.4 | 38.29 |
| CDY15647 | Canola | nucleus | 17.14 | 37.29 |
| GSMUA_Achr5P07660_001 | Banana | nucleus | 28.31 | 36.09 |
| GSMUA_Achr9P05020_001 | Banana | nucleus | 29.35 | 34.45 |
| CDY37670 | Canola | nucleus | 14.55 | 33.33 |
| CDY67393 | Canola | nucleus | 14.55 | 32.94 |
| CDY43923 | Canola | nucleus | 12.99 | 31.06 |
| CDY47405 | Canola | nucleus | 34.03 | 30.54 |
| KRH74885 | Soybean | nucleus | 37.66 | 30.27 |
| CDY66672 | Canola | nucleus | 33.51 | 30.21 |
| KRH70746 | Soybean | nucleus, plastid | 37.66 | 29.9 |
| CDX74440 | Canola | nucleus | 32.21 | 29.25 |
| KRH50577 | Soybean | nucleus | 36.36 | 29.23 |
| GSMUA_Achr11P... | Banana | nucleus | 31.43 | 28.74 |
| CDY37010 | Canola | nucleus | 29.09 | 28.72 |
| GSMUA_Achr6P32240_001 | Banana | nucleus | 28.83 | 28.53 |
| KRG89621 | Soybean | nucleus | 34.55 | 27.59 |
| CDY30261 | Canola | nucleus | 31.43 | 27.5 |
| CDX67434 | Canola | nucleus | 29.87 | 27.19 |
| CDY52832 | Canola | nucleus | 15.58 | 27.03 |
| CDX87836 | Canola | nucleus | 12.73 | 26.92 |
| CDY56923 | Canola | nucleus | 12.99 | 26.88 |
| CDY52953 | Canola | nucleus | 13.51 | 26.8 |
| CDY51457 | Canola | nucleus | 13.25 | 26.7 |
| CDY17783 | Canola | nucleus | 15.58 | 26.2 |
| CDY12790 | Canola | nucleus | 14.81 | 26.03 |
| CDY46544 | Canola | nucleus | 13.51 | 26.0 |
| CDY18628 | Canola | nucleus | 14.29 | 25.94 |
| CDY01450 | Canola | nucleus | 14.81 | 25.91 |
| CDY54696 | Canola | nucleus | 15.84 | 25.63 |
| CDY02086 | Canola | nucleus | 16.1 | 25.62 |
| CDX83127 | Canola | nucleus | 15.58 | 25.53 |
| CDY37299 | Canola | nucleus | 13.25 | 25.5 |
| CDY48879 | Canola | nucleus | 13.51 | 25.24 |
| CDY32420 | Canola | nucleus | 13.51 | 25.24 |
| CDX75689 | Canola | nucleus, plastid | 15.84 | 25.21 |
| CDY23010 | Canola | nucleus | 16.1 | 25.1 |
| CDX81350 | Canola | nucleus | 14.55 | 25.0 |
| CDY69021 | Canola | nucleus | 12.73 | 24.87 |
| CDX69349 | Canola | nucleus, plastid | 15.58 | 24.79 |
| TraesCS3D01G185500.2 | Wheat | nucleus | 34.03 | 24.35 |
| TraesCS3A01G180600.1 | Wheat | nucleus | 34.03 | 24.3 |
| TraesCS3B01G210300.1 | Wheat | nucleus | 33.77 | 24.12 |
| CDY58082 | Canola | nucleus | 12.73 | 23.79 |
| CDY20892 | Canola | nucleus | 12.73 | 23.79 |
| EES02731 | Sorghum | nucleus | 33.77 | 23.21 |
| GSMUA_Achr2P11520_001 | Banana | nucleus | 27.79 | 23.01 |
| Zm00001d040362_P001 | Maize | nucleus | 32.99 | 22.2 |
| CDY17009 | Canola | nucleus | 12.99 | 21.74 |
| Os01t0264000-01 | Rice | nucleus | 25.97 | 20.16 |
Protein Annotations
| MapMan:15.5.1.5 | GO:A0A078JM29 | UniProt:A0A078JM29 | EnsemblPlants:CDY67869 | ProteinID:CDY67869 | ProteinID:CDY67869.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00067590001 | InterPro:IPR003851 | PFAM:PD007478 | PFAM:PF02701 |
| ScanProsite:PS01361 | PFscan:PS50884 | PANTHER:PTHR31089 | UniParc:UPI0004EEE2CB | InterPro:Znf_Dof | SEG:seg |
Description
BnaC06g43390DBnaC06g43390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JM29]
Coordinates
chrLK036596:-:6145..8090
Molecular Weight (calculated)
42562.2 Da
IEP (calculated)
9.423
GRAVY (calculated)
-0.869
Length
385 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKSRDIKLF GTTITSLSSV NHYDPSPWPA AHGGSDQSKE ASSSSSSSCS PSIRPDRVLA AKNGQENSRF KDPYTLSHLN EPPKAASEIL SPISSKTNTD
101: QQSELTTTST SAADKPTTLK KPDKILPCPR CESANTKFCY YNNYNVSQPR YFCRNCQRYW TAGGSMRNVP VGSGRRKNKG WPSSNHYLQV TSEDYENNNN
201: LGTILSFGSS ESSVTETGKH QPGDTKITAD SASQEQRTRQ GFLPPQVIFP NNSSPWPYQW SPTGPNANFY PIPFYWGCTV PVWPTSETPP CLGKRSRDQT
301: EGGMKDATTI TRARVVSETI SISEATKSTV WSPKPERKTE GFSLFNGFET KGSNRRSLVP ETSINIQANP AAMSRSMNFR ENMQQ
101: QQSELTTTST SAADKPTTLK KPDKILPCPR CESANTKFCY YNNYNVSQPR YFCRNCQRYW TAGGSMRNVP VGSGRRKNKG WPSSNHYLQV TSEDYENNNN
201: LGTILSFGSS ESSVTETGKH QPGDTKITAD SASQEQRTRQ GFLPPQVIFP NNSSPWPYQW SPTGPNANFY PIPFYWGCTV PVWPTSETPP CLGKRSRDQT
301: EGGMKDATTI TRARVVSETI SISEATKSTV WSPKPERKTE GFSLFNGFET KGSNRRSLVP ETSINIQANP AAMSRSMNFR ENMQQ
001: MSKSRDTEIK LFGRTITSLL DVNCYDPSSL SPVHDVSSDP SKEDSSSSSS SCSPTIGPIR VPVKKSEQES NKFKDPYILS DLNEPPKAVS EISSPRSSKN
101: NCDQQSEITT TTTTSTTSGE KSTALKKPDK LIPCPRCESA NTKFCYYNNY NVNQPRYFCR NCQRYWTAGG SMRNVPVGSG RRKNKGWPSS NHYLQVTSED
201: CDNNNSGTIL SFGSSESSVT ETGKHQSGDT AKISADSVSQ ENKSYQGFLP PQVMLPNNSS PWPYQWSPTG PNASFYPVPF YWGCTVPIYP TSETSSCLGK
301: RSRDQTEGRI NDTNTTITTT RARLVSESLR MNIEASKSAV WSKLPTKPEK KTQGFSLFNG FDTKGNSNRS SLVSETSHSL QANPAAMSRA MNFRESMQQ
101: NCDQQSEITT TTTTSTTSGE KSTALKKPDK LIPCPRCESA NTKFCYYNNY NVNQPRYFCR NCQRYWTAGG SMRNVPVGSG RRKNKGWPSS NHYLQVTSED
201: CDNNNSGTIL SFGSSESSVT ETGKHQSGDT AKISADSVSQ ENKSYQGFLP PQVMLPNNSS PWPYQWSPTG PNASFYPVPF YWGCTVPIYP TSETSSCLGK
301: RSRDQTEGRI NDTNTTITTT RARLVSESLR MNIEASKSAV WSKLPTKPEK KTQGFSLFNG FDTKGNSNRS SLVSETSHSL QANPAAMSRA MNFRESMQQ
Arabidopsis Description
CDF5Cyclic dof factor 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SEZ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.