Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G210300.1 | Wheat | nucleus | 97.58 | 97.4 |
| TraesCS3A01G180600.1 | Wheat | nucleus | 95.54 | 95.36 |
| EES02731 | Sorghum | nucleus | 70.26 | 67.5 |
| Os01t0264000-01 | Rice | nucleus | 61.34 | 66.53 |
| Zm00001d040362_P001 | Maize | nucleus | 65.8 | 61.89 |
| GSMUA_Achr9P05020_001 | Banana | nucleus | 37.36 | 61.28 |
| TraesCS3D01G193100.1 | Wheat | nucleus | 34.39 | 38.87 |
| TraesCS2D01G100300.1 | Wheat | mitochondrion, nucleus | 35.69 | 38.32 |
| KRH74885 | Soybean | nucleus | 31.6 | 35.49 |
| TraesCS4D01G285100.1 | Wheat | nucleus | 29.0 | 35.29 |
| KRH70746 | Soybean | nucleus, plastid | 31.78 | 35.26 |
| KRH50577 | Soybean | nucleus | 30.86 | 34.66 |
| KRG89621 | Soybean | nucleus | 30.67 | 34.23 |
| CDY67869 | Canola | nucleus | 24.35 | 34.03 |
| CDX95919 | Canola | nucleus | 23.23 | 33.97 |
| CDY01768 | Canola | nucleus | 23.23 | 33.97 |
| CDY72477 | Canola | nucleus | 22.68 | 33.15 |
| Bra004396.1-P | Field mustard | nucleus | 22.68 | 33.15 |
| Bra024683.1-P | Field mustard | nucleus | 20.07 | 33.03 |
| CDY16193 | Canola | nucleus | 20.07 | 33.03 |
| Bra003994.1-P | Field mustard | nucleus | 23.61 | 32.9 |
| CDY07344 | Canola | nucleus | 23.61 | 32.9 |
| AT1G69570.1 | Thale cress | nucleus | 24.16 | 32.58 |
| TraesCS3D01G295100.1 | Wheat | nucleus | 11.9 | 32.0 |
| GSMUA_Achr2P11520_001 | Banana | nucleus | 27.51 | 31.83 |
| TraesCS1D01G336600.1 | Wheat | nucleus, plastid | 12.64 | 31.78 |
| CDY44994 | Canola | nucleus | 15.24 | 30.37 |
| AT1G26790.1 | Thale cress | nucleus, plastid | 20.63 | 29.84 |
| CDY50735 | Canola | extracellular | 19.52 | 28.85 |
| Bra016286.1-P | Field mustard | nucleus | 17.66 | 28.36 |
| TraesCS3D01G271300.1 | Wheat | nucleus | 7.99 | 28.29 |
| CDY46443 | Canola | nucleus | 17.47 | 28.06 |
| TraesCS2D01G563400.1 | Wheat | nucleus | 10.22 | 26.57 |
| CDY50734 | Canola | nucleus | 13.2 | 26.2 |
| TraesCS2D01G563200.1 | Wheat | plastid | 10.59 | 25.79 |
| TraesCS2D01G563000.1 | Wheat | nucleus, plastid | 10.04 | 24.88 |
| TraesCS3D01G108600.1 | Wheat | nucleus | 10.41 | 24.35 |
| TraesCS2D01G563100.1 | Wheat | nucleus | 10.04 | 24.0 |
| TraesCS4D01G080100.1 | Wheat | nucleus | 11.15 | 22.81 |
| TraesCS5D01G259700.1 | Wheat | nucleus | 11.34 | 21.71 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G185500.2 | EnsemblPlantsGene:TraesCS3D01G185500 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR003851 | InterPro:Znf_Dof | PANTHER:PTHR31089 | PFAM:PD007478 | PFAM:PF02701 | PFscan:PS50884 |
| ScanProsite:PS01361 | SEG:seg | MapMan:15.5.1.5 | : | : | : |
Description
No Description!
Coordinates
chr3D:-:170680882..170684034
Molecular Weight (calculated)
57941.2 Da
IEP (calculated)
4.846
GRAVY (calculated)
-0.798
Length
538 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDQMDSGIK LFGRVIPLVP DAAPGPPEAE ATAGSEHPPP PPPASEAEPE ADNNKEQHKE MEDKGDSEMK VDAPEEKEDS ATKGDEPRER KDNEMEVDAP
101: QAKEKAETAS SSTLDHKKDD QAQISNTEEK AASDPKEGNE KKSNDESGQD KVLKKPDKII PCPRCNSMDT KFCYYNNYNV NQPRHFCKNC QRYWTAGGSM
201: RNVPVGAGRR KSKNSALHYR QLLMAPDCLL GSRVDISNTV NPEVLASLPS IPTQSASRSE TVLKFGPEVP LCESMVSVLN IEEQNVTNAG SVPRDETRED
301: NSCASSTTSN NGLPANAVLP GQNGAPAYCN GVGPVPQYYL GAPFMYPWSM GWNNLPVMVP GGSMPESASP SESCSTSSAP WMNSPMMPGS RLPAPPFPYP
401: LVPPALWGCL PSWPAAAWNT PWVGTNGCIS PSGSSNSSCS GNGSPTLGKH SRDPNPQKDD KEEKSLWVPK TLRIDDPDEA AKSSIWATLG IKPGDPGVFK
501: PFQFKGESKG QPADARPARA LQANPAAFSR LQSFQESS
101: QAKEKAETAS SSTLDHKKDD QAQISNTEEK AASDPKEGNE KKSNDESGQD KVLKKPDKII PCPRCNSMDT KFCYYNNYNV NQPRHFCKNC QRYWTAGGSM
201: RNVPVGAGRR KSKNSALHYR QLLMAPDCLL GSRVDISNTV NPEVLASLPS IPTQSASRSE TVLKFGPEVP LCESMVSVLN IEEQNVTNAG SVPRDETRED
301: NSCASSTTSN NGLPANAVLP GQNGAPAYCN GVGPVPQYYL GAPFMYPWSM GWNNLPVMVP GGSMPESASP SESCSTSSAP WMNSPMMPGS RLPAPPFPYP
401: LVPPALWGCL PSWPAAAWNT PWVGTNGCIS PSGSSNSSCS GNGSPTLGKH SRDPNPQKDD KEEKSLWVPK TLRIDDPDEA AKSSIWATLG IKPGDPGVFK
501: PFQFKGESKG QPADARPARA LQANPAAFSR LQSFQESS
001: MADPAIKLFG KTIPLPELGV VDSSSSYTGF LTETQIPVRL SDSCTGDDDD EEMGDSGLGR EEGDDVGDGG GESETDKKEE KDSECQEESL RNESNDVTTT
101: TSGITEKTET TKAAKTNEES GGTACSQEGK LKKPDKILPC PRCNSMETKF CYYNNYNVNQ PRHFCKKCQR YWTAGGTMRN VPVGAGRRKN KSPASHYNRH
201: VSITSAEAMQ KVARTDLQHP NGANLLTFGS DSVLCESMAS GLNLVEKSLL KTQTVLQEPN EGLKITVPLN QTNEEAGTVS PLPKVPCFPG PPPTWPYAWN
301: GVSWTILPFY PPPAYWSCPG VSPGAWNSFT WMPQPNSPSG SNPNSPTLGK HSRDENAAEP GTAFDETESL GREKSKPERC LWVPKTLRID DPEEAAKSSI
401: WETLGIKKDE NADTFGAFRS STKEKSSLSE GRLPGRRPEL QANPAALSRS ANFHESS
101: TSGITEKTET TKAAKTNEES GGTACSQEGK LKKPDKILPC PRCNSMETKF CYYNNYNVNQ PRHFCKKCQR YWTAGGTMRN VPVGAGRRKN KSPASHYNRH
201: VSITSAEAMQ KVARTDLQHP NGANLLTFGS DSVLCESMAS GLNLVEKSLL KTQTVLQEPN EGLKITVPLN QTNEEAGTVS PLPKVPCFPG PPPTWPYAWN
301: GVSWTILPFY PPPAYWSCPG VSPGAWNSFT WMPQPNSPSG SNPNSPTLGK HSRDENAAEP GTAFDETESL GREKSKPERC LWVPKTLRID DPEEAAKSSI
401: WETLGIKKDE NADTFGAFRS STKEKSSLSE GRLPGRRPEL QANPAALSRS ANFHESS
Arabidopsis Description
CDF2Cyclic dof factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZL5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.