CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50577	Soybean	nucleus	88.17	88.73
KRH74885	Soybean	nucleus	55.81	56.16
KRH70746	Soybean	nucleus, plastid	55.6	55.26
KRH42862	Soybean	nucleus	8.51	52.56
GSMUA_Achr5P07660_001	Banana	nucleus	28.84	46.03
KRH01188	Soybean	nucleus	47.72	45.91
KRH03487	Soybean	nucleus	44.61	45.65
GSMUA_Achr9P05020_001	Banana	nucleus	30.71	45.12
KRH56903	Soybean	nucleus	43.98	44.82
KRH40083	Soybean	nucleus	46.06	44.14
KRH54567	Soybean	nucleus	41.49	43.67
KRH58964	Soybean	nucleus	14.94	43.64
KRH63324	Soybean	nucleus	42.12	43.19
KRH21283	Soybean	nucleus	13.07	42.86
KRH11011	Soybean	nucleus	13.07	41.18
KRH18471	Soybean	nucleus	41.49	40.98
GSMUA_Achr6P32240_001	Banana	nucleus	31.54	39.07
CDX95919	Canola	nucleus	29.05	38.04
CDY01768	Canola	nucleus	29.05	38.04
KRG93541	Soybean	nucleus	30.08	37.66
Bra024683.1-P	Field mustard	nucleus	25.1	37.0
CDY16193	Canola	nucleus	25.1	37.0
CDY72477	Canola	nucleus	28.22	36.96
Bra004396.1-P	Field mustard	nucleus	28.22	36.96
Bra003994.1-P	Field mustard	nucleus	28.01	34.97
CDY07344	Canola	nucleus	28.01	34.97
AT1G69570.1	Thale cress	nucleus	28.84	34.84
CDY67869	Canola	nucleus	27.59	34.55
GSMUA_Achr11P...	Banana	nucleus	29.88	34.2
CDY50735	Canola	extracellular	25.73	34.07
AT1G26790.1	Thale cress	nucleus, plastid	25.73	33.33
KRH64974	Soybean	nucleus	31.54	32.97
KRG94921	Soybean	nucleus	32.78	32.71
CDY44994	Canola	nucleus	18.26	32.59
Bra016286.1-P	Field mustard	nucleus	22.41	32.24
CDY46443	Canola	nucleus	22.2	31.94
EES02731	Sorghum	nucleus	36.51	31.43
TraesCS3B01G210300.1	Wheat	nucleus	34.85	31.17
TraesCS3D01G185500.2	Wheat	nucleus	34.23	30.67
TraesCS3A01G180600.1	Wheat	nucleus	33.82	30.24
KRH44749	Soybean	nucleus	27.18	30.18
CDY50734	Canola	nucleus	16.8	29.89
Zm00001d040362_P001	Maize	nucleus	34.44	29.02
KRH44186	Soybean	nucleus	12.66	28.64
KRH09992	Soybean	nucleus	12.45	28.44
KRH70017	Soybean	nucleus	13.69	28.21
GSMUA_Achr2P11520_001	Banana	nucleus	27.18	28.17
KRH13096	Soybean	nucleus, vacuole	27.18	28.11
Os01t0264000-01	Rice	nucleus	28.84	28.02
KRH47156	Soybean	nucleus	12.24	27.96
KRH23341	Soybean	nucleus	12.03	27.36
KRH08373	Soybean	nucleus	13.07	26.69

Protein Annotations

EntrezGene:100807731	MapMan:15.5.1.5	EMBL:ACUP02012230	EnsemblPlantsGene:GLYMA_20G035200	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003851	UniProt:K7N176	EnsemblPlants:KRG89621	ProteinID:KRG89621	ProteinID:KRG89621.1	PFAM:PD007478
PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884	PANTHER:PTHR31089	PANTHER:PTHR31089:SF7	UniParc:UPI000233DAF8
InterPro:Znf_Dof	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:4797765..4801144

Molecular Weight (calculated)

52523.5 Da

IEP (calculated)

6.982

GRAVY (calculated)

-0.768

Length

482 amino acids

Sequence
(BLAST)

001: MSEVKDPAIK LFGRTISLPH THINDSFSSA SASGPACAPS SSSSPREVTS SATQQQHEPE EPSRKVLTSS QDDDDASHQT TEDLKSSTTS SGIFENPKTP
101: SAETETSIPK SSTNGEKSEK SASEEKTLKK PDKVLPCPRC NSMETKFCYY NNYNVNQPRH FCKNCQRYWT AGGTMRNVPA GAGRRKNKNS SATVSHYRHI
201: MFSEGLQGAT LNAPNGLHNA VMTFGPDSPL CDTMASMLNI AERAQSCVPN GFHVTEPNSF VSYRKEEEEE DGTSGHSTGV NSVATTSTLS HSGSHESLDK
301: KVVEGFTPQF PYFPSAPWPY PIPPPTFFPQ GYPLSLYTTP AYWSYMPPSW NNNISAISPQ SSVNNSVSNP TLGKHSRDGN IIASSNSQRE MHDMEHNSSE
401: HNALIPKTLR IDDPREAAKS SISMWSKLGI KNDDKASSGG LFKAFPSSKG NDINHQMVEA SSPVLQANPA ALSRSLTFRE QT

Best Arabidopsis Sequence Match ( AT3G47500.1 )
(BLAST)

001: MMMETRDPAI KLFGMKIPFP SVFESAVTVE DDEEDDWSGG DDKSPEKVTP ELSDKNNNNC NDNSFNNSKP ETLDKEEATS TDQIESSDTP EDNQQTTPDG
101: KTLKKPTKIL PCPRCKSMET KFCYYNNYNI NQPRHFCKAC QRYWTAGGTM RNVPVGAGRR KNKSSSSHYR HITISEALEA ARLDPGLQAN TRVLSFGLEA
201: QQQHVAAPMT PVMKLQEDQK VSNGARNRFH GLADQRLVAR VENGDDCSSG SSVTTSNNHS VDESRAQSGS VVEAQMNNNN NNNMNGYACI PGVPWPYTWN
301: PAMPPPGFYP PPGYPMPFYP YWTIPMLPPH QSSSPISQKC SNTNSPTLGK HPRDEGSSKK DNETERKQKA GCVLVPKTLR IDDPNEAAKS SIWTTLGIKN
401: EAMCKAGGMF KGFDHKTKMY NNDKAENSPV LSANPAALSR SHNFHEQI

Arabidopsis Description

CDF3Cyclic dof factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFV3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.