Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY07344 | Canola | nucleus | 75.19 | 77.72 |
| Bra003994.1-P | Field mustard | nucleus | 75.19 | 77.72 |
| CDY67869 | Canola | nucleus | 74.94 | 77.66 |
| CDY01768 | Canola | nucleus | 69.92 | 75.82 |
| CDX95919 | Canola | nucleus | 69.92 | 75.82 |
| CDY72477 | Canola | nucleus | 69.42 | 75.27 |
| Bra004396.1-P | Field mustard | nucleus | 69.42 | 75.27 |
| AT1G26790.1 | Thale cress | nucleus, plastid | 52.63 | 56.45 |
| AT1G29160.1 | Thale cress | nucleus | 17.79 | 40.57 |
| AT5G62430.1 | Thale cress | nucleus | 30.08 | 40.27 |
| AT2G34140.1 | Thale cress | nucleus | 16.54 | 38.82 |
| GSMUA_Achr5P07660_001 | Banana | nucleus | 27.82 | 36.76 |
| GSMUA_Achr9P05020_001 | Banana | nucleus | 28.82 | 35.06 |
| KRH74885 | Soybean | nucleus | 37.84 | 31.52 |
| KRH70746 | Soybean | nucleus, plastid | 38.1 | 31.34 |
| AT3G47500.1 | Thale cress | nucleus | 34.09 | 30.36 |
| KRH50577 | Soybean | nucleus | 36.34 | 30.27 |
| GSMUA_Achr11P... | Banana | nucleus | 31.83 | 30.17 |
| GSMUA_Achr6P32240_001 | Banana | nucleus | 29.07 | 29.82 |
| KRG89621 | Soybean | nucleus | 34.84 | 28.84 |
| AT5G39660.1 | Thale cress | nucleus | 31.33 | 27.35 |
| AT5G66940.1 | Thale cress | nucleus | 14.29 | 25.33 |
| AT3G50410.1 | Thale cress | nucleus | 16.04 | 25.3 |
| AT1G51700.1 | Thale cress | nucleus | 11.78 | 24.23 |
| TraesCS3D01G185500.2 | Wheat | nucleus | 32.58 | 24.16 |
| TraesCS3A01G180600.1 | Wheat | nucleus | 32.58 | 24.12 |
| TraesCS3B01G210300.1 | Wheat | nucleus | 32.58 | 24.12 |
| AT4G38000.1 | Thale cress | nucleus, plastid | 14.54 | 23.58 |
| AT3G21270.1 | Thale cress | nucleus | 12.03 | 23.53 |
| EES02731 | Sorghum | nucleus | 32.58 | 23.21 |
| AT1G47655.1 | Thale cress | nucleus | 12.03 | 22.97 |
| Zm00001d040362_P001 | Maize | nucleus | 32.58 | 22.73 |
| GSMUA_Achr2P11520_001 | Banana | nucleus | 26.07 | 22.37 |
| Os01t0264000-01 | Rice | nucleus | 25.31 | 20.36 |
Protein Annotations
| MapMan:15.5.1.5 | EntrezGene:843293 | ProteinID:AAF24604.1 | ProteinID:AAG60104.1 | ProteinID:AEE34950.1 | EMBL:AF079504 |
| EMBL:AK176346 | ArrayExpress:AT1G69570 | EnsemblPlantsGene:AT1G69570 | RefSeq:AT1G69570 | TAIR:AT1G69570 | RefSeq:AT1G69570-TAIR-G |
| EnsemblPlants:AT1G69570.1 | TAIR:AT1G69570.1 | EMBL:BT025623 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 |
| GO:GO:0046872 | GO:GO:0048577 | GO:GO:0048579 | InterPro:IPR003851 | RefSeq:NP_177116.1 | PFAM:PD007478 |
| PFAM:PF02701 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS01361 | PFscan:PS50884 |
| PANTHER:PTHR31089 | UniProt:Q9SEZ3 | UniParc:UPI00000AB02C | InterPro:Znf_Dof | SEG:seg | : |
Description
CDF5Cyclic dof factor 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SEZ3]
Coordinates
chr1:-:26161528..26163715
Molecular Weight (calculated)
44008.8 Da
IEP (calculated)
8.824
GRAVY (calculated)
-0.847
Length
399 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKSRDTEIK LFGRTITSLL DVNCYDPSSL SPVHDVSSDP SKEDSSSSSS SCSPTIGPIR VPVKKSEQES NKFKDPYILS DLNEPPKAVS EISSPRSSKN
101: NCDQQSEITT TTTTSTTSGE KSTALKKPDK LIPCPRCESA NTKFCYYNNY NVNQPRYFCR NCQRYWTAGG SMRNVPVGSG RRKNKGWPSS NHYLQVTSED
201: CDNNNSGTIL SFGSSESSVT ETGKHQSGDT AKISADSVSQ ENKSYQGFLP PQVMLPNNSS PWPYQWSPTG PNASFYPVPF YWGCTVPIYP TSETSSCLGK
301: RSRDQTEGRI NDTNTTITTT RARLVSESLR MNIEASKSAV WSKLPTKPEK KTQGFSLFNG FDTKGNSNRS SLVSETSHSL QANPAAMSRA MNFRESMQQ
101: NCDQQSEITT TTTTSTTSGE KSTALKKPDK LIPCPRCESA NTKFCYYNNY NVNQPRYFCR NCQRYWTAGG SMRNVPVGSG RRKNKGWPSS NHYLQVTSED
201: CDNNNSGTIL SFGSSESSVT ETGKHQSGDT AKISADSVSQ ENKSYQGFLP PQVMLPNNSS PWPYQWSPTG PNASFYPVPF YWGCTVPIYP TSETSSCLGK
301: RSRDQTEGRI NDTNTTITTT RARLVSESLR MNIEASKSAV WSKLPTKPEK KTQGFSLFNG FDTKGNSNRS SLVSETSHSL QANPAAMSRA MNFRESMQQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.