Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G29160.1 | Thale cress | nucleus | 81.18 | 78.86 |
| CDY37670 | Canola | nucleus | 77.06 | 77.98 |
| Bra021895.1-P | Field mustard | nucleus | 76.47 | 77.38 |
| CDY67393 | Canola | nucleus | 77.06 | 77.06 |
| VIT_10s0003g01260.t01 | Wine grape | nucleus | 58.82 | 62.89 |
| KRH42862 | Soybean | nucleus | 28.24 | 61.54 |
| KRH58964 | Soybean | nucleus | 51.76 | 53.33 |
| KRH21283 | Soybean | nucleus | 44.12 | 51.02 |
| Solyc02g076850.1.1 | Tomato | nucleus | 48.82 | 50.92 |
| PGSC0003DMT400087458 | Potato | nucleus | 48.82 | 50.3 |
| KRH11011 | Soybean | nucleus | 43.53 | 48.37 |
| AT1G51700.1 | Thale cress | nucleus | 27.06 | 23.71 |
| AT3G21270.1 | Thale cress | nucleus | 28.24 | 23.53 |
| AT5G62430.1 | Thale cress | nucleus | 36.47 | 20.81 |
| AT1G47655.1 | Thale cress | nucleus | 24.71 | 20.1 |
| AT5G66940.1 | Thale cress | nucleus | 26.47 | 20.0 |
| AT3G50410.1 | Thale cress | nucleus | 28.82 | 19.37 |
| AT4G38000.1 | Thale cress | nucleus, plastid | 27.65 | 19.11 |
| AT1G26790.1 | Thale cress | nucleus, plastid | 36.47 | 16.67 |
| AT1G69570.1 | Thale cress | nucleus | 38.82 | 16.54 |
| AT3G47500.1 | Thale cress | nucleus | 41.76 | 15.85 |
| AT5G39660.1 | Thale cress | nucleus | 41.18 | 15.32 |
| TraesCS3D01G193100.1 | Wheat | nucleus | 40.59 | 14.5 |
| TraesCS3A01G189600.1 | Wheat | nucleus | 40.0 | 14.29 |
| Zm00001d040455_P001 | Maize | nucleus | 40.0 | 13.26 |
| Os01t0277500-01 | Rice | nucleus | 42.94 | 13.18 |
| EES00579 | Sorghum | nucleus | 39.41 | 13.09 |
Protein Annotations
| MapMan:15.5.1.5 | EntrezGene:817975 | ProteinID:AAB67632.1 | ProteinID:AEC08923.1 | EMBL:AK221308 | ArrayExpress:AT2G34140 |
| EnsemblPlantsGene:AT2G34140 | RefSeq:AT2G34140 | TAIR:AT2G34140 | RefSeq:AT2G34140-TAIR-G | EnsemblPlants:AT2G34140.1 | TAIR:AT2G34140.1 |
| Unigene:At.43132 | EMBL:BT010496 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0045892 | GO:GO:0046872 |
| GO:GO:1902455 | InterPro:IPR003851 | RefSeq:NP_180961.1 | UniProt:O22967 | PFAM:PD007478 | PFAM:PF02701 |
| PO:PO:0000293 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009029 | PO:PO:0009046 |
| PO:PO:0020100 | ScanProsite:PS01361 | PFscan:PS50884 | PANTHER:PTHR31089 | PANTHER:PTHR31089:SF14 | UniParc:UPI00000A6DE5 |
| InterPro:Znf_Dof | : | : | : | : | : |
Description
CDF4Cyclic dof factor 4 [Source:UniProtKB/Swiss-Prot;Acc:O22967]
Coordinates
chr2:-:14413694..14414788
Molecular Weight (calculated)
18927.5 Da
IEP (calculated)
9.595
GRAVY (calculated)
-0.622
Length
170 amino acids
Sequence
(BLAST)
(BLAST)
001: MATQDSQGIK LFGKTIAFNT RTIKNEEETH PPEQEATIAV RSSSSSDLTA EKRPDKIIAC PRCKSMETKF CYFNNYNVNQ PRHFCKGCHR YWTAGGALRN
101: VPVGAGRRKS KPPGRVVVGM LGDGNGVRQV ELINGLLVEE WQHAAAAAHG SFRHDFPMKR LRCYSDGQSC
101: VPVGAGRRKS KPPGRVVVGM LGDGNGVRQV ELINGLLVEE WQHAAAAAHG SFRHDFPMKR LRCYSDGQSC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.