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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY69244 Canola nucleus 77.18 78.77
CDY00286 Canola nucleus 72.15 78.75
CDY69084 Canola nucleus 72.15 78.47
CDY67518 Canola nucleus 76.51 78.08
Bra029261.1-P Field mustard nucleus 76.17 77.74
Bra010082.1-P Field mustard nucleus 68.79 76.49
AT3G47500.1 Thale cress nucleus 69.13 45.98
KRH54567 Soybean nucleus 59.73 38.86
AT1G29160.1 Thale cress nucleus 22.15 37.71
KRH63324 Soybean nucleus 59.06 37.45
KRH56903 Soybean nucleus 59.06 37.21
KRH03487 Soybean nucleus 58.05 36.73
AT2G34140.1 Thale cress nucleus 20.81 36.47
VIT_17s0000g06310.t01 Wine grape nucleus 57.72 36.36
VIT_01s0026g02580.t01 Wine grape nucleus 55.7 34.8
Solyc03g115940.2.1 Tomato nucleus 53.69 31.94
PGSC0003DMT400050273 Potato nucleus 52.01 30.82
AT5G39660.1 Thale cress nucleus 46.64 30.42
AT1G26790.1 Thale cress nucleus, plastid 37.58 30.11
AT1G69570.1 Thale cress nucleus 40.27 30.08
EER95426 Sorghum nucleus 42.28 29.72
Solyc06g069760.2.1 Tomato nucleus 48.99 29.67
PGSC0003DMT400083080 Potato nucleus 48.99 29.67
Os03t0169600-01 Rice nucleus 42.95 29.09
TraesCS4A01G017700.1 Wheat nucleus 42.62 29.06
TraesCS4B01G286400.1 Wheat nucleus 41.95 28.87
HORVU4Hr1G074990.1 Barley nucleus 41.95 28.28
TraesCS4D01G285100.1 Wheat nucleus 41.95 28.28
Zm00001d027846_P001 Maize nucleus 40.6 28.01
OQU90492 Sorghum nucleus 43.96 27.07
Os07t0685000-02 Rice nucleus 42.95 26.89
HORVU2Hr1G017290.1 Barley nucleus 41.95 26.32
TraesCS2A01G100800.1 Wheat nucleus 42.28 26.3
TraesCS2B01G118000.1 Wheat nucleus 41.95 26.1
Zm00001d022525_P001 Maize nucleus 43.29 25.05
TraesCS2D01G100300.1 Wheat mitochondrion, nucleus 41.95 24.95
AT1G47655.1 Thale cress nucleus 17.45 24.88
AT4G38000.1 Thale cress nucleus, plastid 19.46 23.58
AT3G21270.1 Thale cress nucleus 15.77 23.04
AT1G51700.1 Thale cress nucleus 14.43 22.16
AT3G50410.1 Thale cress nucleus 18.46 21.74
AT5G66940.1 Thale cress nucleus 15.44 20.44
Protein Annotations
MapMan:15.5.1.5EntrezGene:836364EMBL:AB231333ProteinID:AED97607.1EMBL:AF446362ArrayExpress:AT5G62430
EnsemblPlantsGene:AT5G62430RefSeq:AT5G62430TAIR:AT5G62430RefSeq:AT5G62430-TAIR-GEnsemblPlants:AT5G62430.1TAIR:AT5G62430.1
EMBL:AY143830ProteinID:BAB11493.1Symbol:CDF1GO:GO:0000003GO:GO:0000978GO:GO:0001210
GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351
GO:GO:0006355GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009658
GO:GO:0009791GO:GO:0009908GO:GO:0009987GO:GO:0010228GO:GO:0016043GO:GO:0045892
GO:GO:0046872GO:GO:0048510InterPro:IPR003851RefSeq:NP_201049.3PFAM:PD007478PFAM:PF02701
PO:PO:0000013PO:PO:0000037PO:PO:0000084PO:PO:0000230PO:PO:0000293PO:PO:0001054
PO:PO:0001185PO:PO:0002000PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115
PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006
PO:PO:0009009PO:PO:0009015PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031
PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020100
PO:PO:0020137PO:PO:0025022PO:PO:0025281ScanProsite:PS01361PFscan:PS50884PANTHER:PTHR31089
PANTHER:PTHR31089:SF7UniProt:Q8W1E3UniParc:UPI00000A463CInterPro:Znf_DofSEG:seg:
Description
CDF1Cyclic dof factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W1E3]
Coordinates
chr5:-:25069093..25071111
Molecular Weight (calculated)
33640.6 Da
IEP (calculated)
9.155
GRAVY (calculated)
-0.799
Length
298 amino acids
Sequence
(BLAST)
001: MLETKDPAIK LFGMKIPFPT VLEVADEEEE KNQNKTLTDQ SEKDKTLKKP TKILPCPRCN SMETKFCYYN NYNVNQPRHF CKACQRYWTS GGTMRSVPIG
101: AGRRKNKNNS PTSHYHHVTI SETNGPVLSF SLGDDQKVSS NRFGNQKLVA RIENNDERSN NNTSNGLNCF PGVSWPYTWN PAFYPVYPYW SMPVLSSPVS
201: SSPTSTLGKH SRDEDETVKQ KQRNGSVLVP KTLRIDDPNE AAKSSIWTTL GIKNEVMFNG FGSKKEVKLS NKEETETSLV LCANPAALSR SINFHEQM
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.