Factsheet for VIT_17s0000g06310.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g05810.t01
VIT_18s0157g00020.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G47500.1	VIT_01s0011g05810.t01	AT1G68050.1	16002617
AT5G62430.1	VIT_18s0157g00020.t01	AT1G22770.1	17872410
AT5G62430.1	VIT_01s0011g05810.t01	AT1G68050.1	16002617

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0108g00980.t01	Wine grape	nucleus	63.85	59.1
KRH03487	Soybean	nucleus	57.51	57.75
AT5G62430.1	Thale cress	nucleus	36.36	57.72
CDY00286	Canola	nucleus	33.19	57.51
CDY69084	Canola	nucleus	33.19	57.3
KRH56903	Soybean	nucleus	57.29	57.29
CDY67518	Canola	nucleus	35.1	56.85
CDY69244	Canola	nucleus	35.1	56.85
KRH54567	Soybean	nucleus	54.55	56.33
KRH63324	Soybean	nucleus	55.81	56.17
Bra029261.1-P	Field mustard	nucleus	34.46	55.82
VIT_01s0026g02580.t01	Wine grape	nucleus	55.81	55.35
Bra010082.1-P	Field mustard	nucleus	31.08	54.85
CDY47405	Canola	nucleus	47.36	52.21
CDY66672	Canola	nucleus	46.93	51.99
Bra018141.1-P	Field mustard	nucleus	46.93	51.99
Solyc03g115940.2.1	Tomato	nucleus	54.97	51.9
KRH18471	Soybean	nucleus	52.64	51.02
PGSC0003DMT400050273	Potato	nucleus	54.12	50.89
AT3G47500.1	Thale cress	nucleus	47.36	50.0
VIT_10s0003g01260.t01	Wine grape	nucleus	16.49	49.06
KRG93541	Soybean	nucleus	38.69	47.53
PGSC0003DMT400083080	Potato	nucleus	49.26	47.36
Solyc06g069760.2.1	Tomato	nucleus	48.63	46.75
EER95426	Sorghum	nucleus	36.58	40.8
Os03t0169600-01	Rice	nucleus	36.79	39.55
HORVU4Hr1G074990.1	Barley	nucleus	36.79	39.37
VIT_08s0056g01230.t01	Wine grape	nucleus	41.01	39.27
TraesCS4B01G286400.1	Wheat	nucleus	35.94	39.26
TraesCS4D01G285100.1	Wheat	nucleus	36.58	39.14
TraesCS4A01G017700.1	Wheat	nucleus	36.15	39.13
Zm00001d027846_P001	Maize	nucleus	35.1	38.43
OQU90492	Sorghum	nucleus	38.48	37.6
Os07t0685000-02	Rice	nucleus	37.63	37.4
TraesCS2A01G100800.1	Wheat	nucleus	36.79	36.33
HORVU2Hr1G017290.1	Barley	nucleus	36.15	36.0
Zm00001d022525_P001	Maize	nucleus	39.11	35.92
TraesCS2B01G118000.1	Wheat	nucleus	36.36	35.91
TraesCS2D01G100300.1	Wheat	mitochondrion, nucleus	36.58	34.53
VIT_07s0255g00020.t01	Wine grape	nucleus	14.8	31.82
VIT_03s0063g01350.t01	Wine grape	nucleus	11.42	31.21
VIT_09s0002g02490.t01	Wine grape	nucleus	13.95	30.56
VIT_18s0001g11310.t01	Wine grape	nucleus	14.59	30.53

Protein Annotations

EntrezGene:100257057	wikigene:100257057	MapMan:15.5.1.5	EMBL:AM487960	ProteinID:CAN79859	ProteinID:CAN79859.1
ProteinID:CCB43081	ProteinID:CCB43081.1	UniProt:F6GT72	EMBL:FN594950	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003851	EntrezGene:LOC100257057	wikigene:LOC100257057	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361
PFscan:PS50884	PANTHER:PTHR31089	PANTHER:PTHR31089:SF7	TIGR:TC64284	UniParc:UPI000198526C	ArrayExpress:VIT_17s0000g06310
EnsemblPlantsGene:VIT_17s0000g06310	EnsemblPlants:VIT_17s0000g06310.t01	unigene:Vvi.23072	RefSeq:XP_002281994	RefSeq:XP_002281994.1	InterPro:Znf_Dof
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr17:+:6845904..6848869

Molecular Weight (calculated)

51592.8 Da

IEP (calculated)

6.697

GRAVY (calculated)

-0.800

Length

473 amino acids

Sequence
(BLAST)

001: MQEPKDPAFK LFGKTIPMLA DGDAPVSSGD VGDSGAAVAR EDGLEEETEK DALGGKPAET KGEDGSEESR NSETVAESNE NPKTPSIAEE NVTLKTSKAE
101: KGQSDSPDSQ EKTLKKPDKI LPCPRCNSMD TKFCYYNNYN INQPRHFCKS CQRYWTAGGT MRNVPVGAGR RKNKNSASHY RHITISEALQ TVRIEATNGV
201: HQPTLKSNGT VLTFGSDAPF CDSMTSVLNL EEKKMPNGAR NGFHTHEEQG IPVSFRVQEN GDDHSSASSI TVSNSSEEGS KYGLHEAKRN SHGVPSRIPC
301: IPGIPWPYPW NSAVPPPFCP PGFPMPFYPA AYWNCHVTAP WNIPWLSPPS SSANQKTPNS RQNSPTLGKH SREGDILKPS IVEDEETPKQ RSSERCLWVP
401: KTLRIDDPAE AAKSSIWTTL GIKNDKVDSV SGGGLFNAFH LKGDDKNHAI DTSAVLRANP AALSRSLNFQ ESS

Best Arabidopsis Sequence Match ( AT3G47500.1 )
(BLAST)

001: MMMETRDPAI KLFGMKIPFP SVFESAVTVE DDEEDDWSGG DDKSPEKVTP ELSDKNNNNC NDNSFNNSKP ETLDKEEATS TDQIESSDTP EDNQQTTPDG
101: KTLKKPTKIL PCPRCKSMET KFCYYNNYNI NQPRHFCKAC QRYWTAGGTM RNVPVGAGRR KNKSSSSHYR HITISEALEA ARLDPGLQAN TRVLSFGLEA
201: QQQHVAAPMT PVMKLQEDQK VSNGARNRFH GLADQRLVAR VENGDDCSSG SSVTTSNNHS VDESRAQSGS VVEAQMNNNN NNNMNGYACI PGVPWPYTWN
301: PAMPPPGFYP PPGYPMPFYP YWTIPMLPPH QSSSPISQKC SNTNSPTLGK HPRDEGSSKK DNETERKQKA GCVLVPKTLR IDDPNEAAKS SIWTTLGIKN
401: EAMCKAGGMF KGFDHKTKMY NNDKAENSPV LSANPAALSR SHNFHEQI

Arabidopsis Description

CDF3Cyclic dof factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFV3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.