Factsheet for Solyc03g115940.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g005300.2.1
Solyc03g006800.1.1
Solyc04g071990.2.1
Solyc12g056650.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G47500.1	Solyc01g005300.2.1	AT1G68050.1	16002617
AT5G62430.1	Solyc04g071990.2.1	AT1G22770.1	17872410
AT5G62430.1	Solyc12g056650.1.1	AT1G22770.1	17872410
AT5G62430.1	Solyc01g005300.2.1	AT1G68050.1	16002617
AT5G62430.1	Solyc03g006800.1.1	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400050273	Potato	nucleus	94.61	94.23
Solyc06g069760.2.1	Tomato	nucleus	55.69	56.71
VIT_17s0000g06310.t01	Wine grape	nucleus	51.9	54.97
CDY69084	Canola	nucleus	29.54	54.01
AT5G62430.1	Thale cress	nucleus	31.94	53.69
CDY00286	Canola	nucleus	29.14	53.48
KRH03487	Soybean	nucleus	49.9	53.08
CDY67518	Canola	nucleus	30.54	52.4
CDY69244	Canola	nucleus	30.54	52.4
KRH56903	Soybean	nucleus	49.1	52.01
KRH54567	Soybean	nucleus	47.51	51.97
Bra029261.1-P	Field mustard	nucleus	29.94	51.37
VIT_01s0026g02580.t01	Wine grape	nucleus	48.7	51.15
KRH63324	Soybean	nucleus	47.9	51.06
Bra010082.1-P	Field mustard	nucleus	27.15	50.75
CDY47405	Canola	nucleus	41.12	48.02
CDY66672	Canola	nucleus	40.72	47.78
Bra018141.1-P	Field mustard	nucleus	40.72	47.78
Solyc02g067230.2.1	Tomato	nucleus	43.91	47.11
AT3G47500.1	Thale cress	nucleus	40.92	45.76
Solyc02g076850.1.1	Tomato	nucleus	14.77	45.4
Solyc05g007880.2.1	Tomato	nucleus	38.92	44.22
Solyc02g088070.2.1	Tomato	nucleus	39.72	43.07
EER95426	Sorghum	nucleus	32.93	38.92
Os03t0169600-01	Rice	nucleus	33.53	38.18
TraesCS4A01G017700.1	Wheat	nucleus	32.53	37.3
TraesCS4B01G286400.1	Wheat	nucleus	32.14	37.18
TraesCS4D01G285100.1	Wheat	nucleus	32.73	37.1
Zm00001d027846_P001	Maize	nucleus	31.74	36.81
Os07t0685000-02	Rice	nucleus	34.93	36.76
HORVU4Hr1G074990.1	Barley	nucleus	32.34	36.65
TraesCS2A01G100800.1	Wheat	nucleus	34.33	35.91
TraesCS2B01G118000.1	Wheat	nucleus	34.13	35.7
HORVU2Hr1G017290.1	Barley	nucleus	33.73	35.58
OQU90492	Sorghum	nucleus	33.53	34.71
TraesCS2D01G100300.1	Wheat	mitochondrion, nucleus	34.33	34.33
Solyc06g062520.1.1	Tomato	nucleus	12.97	33.85
Zm00001d022525_P001	Maize	nucleus	33.73	32.82
Solyc02g065290.1.1	Tomato	nucleus	12.97	32.02
Solyc03g121400.1.1	Tomato	nucleus	12.77	30.48
Solyc04g079570.1.1	Tomato	nucleus	13.37	28.03
Solyc02g090220.2.1	Tomato	nucleus	13.37	25.97

Protein Annotations

MapMan:15.5.1.5	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003851	UniProt:K4BL96
PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884	PANTHER:PTHR31089	PANTHER:PTHR31089:SF7
EnsemblPlantsGene:Solyc03g115940.2	EnsemblPlants:Solyc03g115940.2.1	UniParc:UPI0002768D20	InterPro:Znf_Dof	SEG:seg	:

Description

No Description!

Coordinates

chr3:-:65513720..65516350

Molecular Weight (calculated)

54506.5 Da

IEP (calculated)

5.170

GRAVY (calculated)

-0.774

Length

501 amino acids

Sequence
(BLAST)

001: MREVKEPEIK LFGKKIVLPE NGMILPVIVT GEDSDVGKSM SASEVVTADE SSTGSDRDPC LVDKEGNSSQ QDESDDGSEY EKDEADKDRM TRELSEAKLE
101: EKDQNLMMEE SENLKSPSEN KTKTHTIDDD SPTVKSSKTE DDQNDASNSQ QKTLKKPDKI LPCPRCNSMD TKFCYYNNYN VNQPRHFCKS CQRYWTAGGT
201: MRNVPVGAGR RKNKNSASHC RHIMISEALE AARIDPPNGF SHPVFKPNGT VLSFGPDLPL CDSMASVLNL AENKTPNGIR NGLYRPENPS GIGGENGDDC
301: SSGSSVTTSN SMAEGVKNCP PEAVMQTINA FPSPVPCLPG VPWPIPYAAV PFPAISPAGY PMPFCPPPYW NCNVPGPWSL PWLTPPSPTA NQKGSVSAPN
401: SPLGKHSRDG ELLKPNNPEG QKNSEGSVLV PKTLRIDDPD EAAKSSIWST LGIKYDSVSR GGLFKSLQPK NSEKDHPTTT SPSLQANPAA FSRSLSFQER
501: V

Best Arabidopsis Sequence Match ( AT3G47500.1 )
(BLAST)

001: MMMETRDPAI KLFGMKIPFP SVFESAVTVE DDEEDDWSGG DDKSPEKVTP ELSDKNNNNC NDNSFNNSKP ETLDKEEATS TDQIESSDTP EDNQQTTPDG
101: KTLKKPTKIL PCPRCKSMET KFCYYNNYNI NQPRHFCKAC QRYWTAGGTM RNVPVGAGRR KNKSSSSHYR HITISEALEA ARLDPGLQAN TRVLSFGLEA
201: QQQHVAAPMT PVMKLQEDQK VSNGARNRFH GLADQRLVAR VENGDDCSSG SSVTTSNNHS VDESRAQSGS VVEAQMNNNN NNNMNGYACI PGVPWPYTWN
301: PAMPPPGFYP PPGYPMPFYP YWTIPMLPPH QSSSPISQKC SNTNSPTLGK HPRDEGSSKK DNETERKQKA GCVLVPKTLR IDDPNEAAKS SIWTTLGIKN
401: EAMCKAGGMF KGFDHKTKMY NNDKAENSPV LSANPAALSR SHNFHEQI

Arabidopsis Description

CDF3Cyclic dof factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFV3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.