Factsheet for Solyc01g005300.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g101000.2.1
Solyc03g115770.2.1
Solyc03g115940.2.1
Solyc04g071990.2.1
Solyc05g007880.2.1
Solyc05g056550.2.1
Solyc06g069690.2.1
Solyc06g069760.2.1
Solyc12g056650.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68050.1	Solyc04g071990.2.1	AT1G22770.1	17704763
AT1G68050.1	Solyc12g056650.1.1	AT1G22770.1	17704763
AT1G68050.1	Solyc04g071990.2.1	AT1G22770.1	17872410
AT1G68050.1	Solyc12g056650.1.1	AT1G22770.1	17872410
AT1G68050.1	Solyc01g101000.2.1	AT3G05840.1	14749489
AT1G68050.1	Solyc03g115940.2.1	AT3G47500.1	16002617
AT1G68050.1	Solyc06g069760.2.1	AT3G47500.1	16002617
AT1G68050.1	Solyc05g056550.2.1	AT5G08590.1	14749489
AT1G68050.1	Solyc05g056550.2.1	AT5G08590.1	17872410
AT1G68050.1	Solyc05g056550.2.1	AT5G08590.1	21798944
AT1G68050.1	Solyc05g007880.2.1	AT5G39660.1	16002617
AT1G68050.1	Solyc03g115770.2.1	AT5G61380.1	14654842
AT1G68050.1	Solyc06g069690.2.1	AT5G61380.1	14654842
AT1G68050.1	Solyc03g115940.2.1	AT5G62430.1	16002617
AT1G68050.1	Solyc06g069760.2.1	AT5G62430.1	16002617

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400051416	Potato	cytosol	87.31	83.6
VIT_01s0011g05810.t01	Wine grape	cytosol	77.27	76.14
KRH60424	Soybean	cytosol	77.43	75.81
AT1G68050.1	Thale cress	cytosol	72.49	71.08
KRH41723	Soybean	cytosol, extracellular, nucleus	75.45	70.79
OQU83614	Sorghum	cytosol	63.59	64.98
Zm00001d007445_P001	Maize	cytosol	65.07	64.86
GSMUA_Achr7P11200_001	Banana	cytosol	61.12	64.86
Zm00001d053091_P001	Maize	cytosol	65.4	64.24
Os11t0547000-01	Rice	cytosol	66.39	63.97
TraesCS4B01G157500.1	Wheat	cytosol	60.96	59.68
TraesCS4A01G164000.1	Wheat	cytosol	61.12	59.27
Solyc07g017750.2.1	Tomato	mitochondrion	52.88	58.26
Solyc07g017740.2.1	Tomato	cytosol	6.43	25.16
Solyc06g063300.2.1	Tomato	endoplasmic reticulum, plastid	15.82	15.64

Protein Annotations

MapMan:19.2.2.8.1.4.4	Gene3D:2.120.10.80	MapMan:26.1.2.3.1	Gene3D:3.30.450.20	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006355
GO:GO:0007275	GO:GO:0007623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628
GO:GO:0009637	GO:GO:0009791	GO:GO:0009908	GO:GO:0009911	GO:GO:0009987	GO:GO:0010468
InterPro:IPR000014	InterPro:IPR001810	InterPro:IPR015915	UniProt:K4AS97	InterPro:Kelch-typ_b-propeller	InterPro:PAS
InterPro:PAS-like_dom_sf	PFAM:PF00646	PFAM:PF13415	PFAM:PF13418	PFAM:PF13426	PFscan:PS50112
PANTHER:PTHR23244	PANTHER:PTHR23244:SF263	SUPFAM:SSF117281	SUPFAM:SSF55785	SUPFAM:SSF81383	EnsemblPlantsGene:Solyc01g005300.2
EnsemblPlants:Solyc01g005300.2.1	TIGRFAMs:TIGR00229	UniParc:UPI0002761AC0	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:+:216655..221730

Molecular Weight (calculated)

67801.3 Da

IEP (calculated)

4.723

GRAVY (calculated)

-0.341

Length

607 amino acids

Sequence
(BLAST)

001: MEEEEEENMR REKRFKCIKM DEDEDEDEEG EILDYYDDDE DEDEEEFENI EVTSQPVGFF YPLTTPSSIV VSDALDPDLP VIYVNSVFES STGYRADEVL
101: GRNCRFLQFR DPRAQRRHPL VDPVVVSEIR RCLEEGVDFQ GELLNFKKDG TPVVNRLRLA PIHSDDGTVT HIIGIQMFSE TKIDLNTVSY PVFRETCQSH
201: CDESSEYSIK SGNLLHCQHR EICGILQLSD EVLAHNILSR LTPRDVASIG SVCRRIRQLT KNEHVRKMVC QNAWGADVTG VLEHMTKKLA WGRLARELTT
301: LEAVCWKKLT VRGAVEPSRC NFSACAAGNR LVLFGGEGVN MQPMDDTFVL NLDAANPEWR RVSVKSSPPG RWGHTLSCLN GSWLVVFGGC GRQGLLNDVF
401: VLDLDAKQPT WKEVSGGAPP LPRCWHSSCT MEGSKLVVSG GCTGAGVLLS DTYLLDLTND KPTWREIPTA WTPPSRLGHS LSAYGKTKVL MFGGLANSAN
501: VRLRSGESYT IDLEDERPEW RQLECGAFTG VGSQNAVVPP PRLDHVAVTM PCGRIIIFGG SIGGLHSPSQ LFLLDPSEEK PLWRTLSDWV LNELYELCLA
601: SKQDSDA

Best Arabidopsis Sequence Match ( AT1G68050.1 )
(BLAST)

001: MAREHAIGEA TGKRKKRGRV EEAEEYCNDG IEEQVEDEKL PLEVGMFYYP MTPPSFIVSD ALEPDFPLIY VNRVFEVFTG YRADEVLGRN CRFLQYRDPR
101: AQRRHPLVDP VVVSEIRRCL EEGIEFQGEL LNFRKDGTPL VNRLRLAPIR DDDGTITHVI GIQVFSETTI DLDRVSYPVF KHKQQLDQTS ECLFPSGSPR
201: FKEHHEDFCG ILQLSDEVLA HNILSRLTPR DVASIGSACR RLRQLTKNES VRKMVCQNAW GKEITGTLEI MTKKLRWGRL ARELTTLEAV CWRKFTVGGI
301: VQPSRCNFSA CAVGNRLVLF GGEGVNMQPL DDTFVLNLDA ECPEWQRVRV TSSPPGRWGH TLSCLNGSWL VVFGGCGRQG LLNDVFVLDL DAKHPTWKEV
401: AGGTPPLPRS WHSSCTIEGS KLVVSGGCTD AGVLLSDTFL LDLTTDKPTW KEIPTSWAPP SRLGHSLSVF GRTKILMFGG LANSGHLKLR SGEAYTIDLE
501: DEEPRWRELE CSAFPGVVVP PPRLDHVAVS MPCGRVIIFG GSIAGLHSPS QLFLIDPAEE KPSWRILNVP GKPPKLAWGH STCVVGGTRV LVLGGHTGEE
601: WILNELHELC LASRQDSDL

Arabidopsis Description

ADO3FKF1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8F6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.