Factsheet for Solyc06g063300.2.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid

Predictor Summary:

plastid 4
endoplasmic reticulum 3
nucleus 1
extracellular 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400068170	Potato	endoplasmic reticulum, plasma membrane, plastid	72.8	95.92
VIT_09s0054g00610.t01	Wine grape	plastid	47.23	61.31
KRH47295	Soybean	endoplasmic reticulum, plasma membrane, plastid	45.28	60.83
KRH44610	Soybean	endoplasmic reticulum, nucleus, peroxisome	41.69	58.18
Bra001813.1-P	Field mustard	cytosol, endoplasmic reticulum, plastid	41.21	55.0
CDY32406	Canola	cytosol, endoplasmic reticulum, plastid	40.88	54.33
CDX82216	Canola	cytosol, endoplasmic reticulum, plastid	40.88	54.21
AT1G51550.1	Thale cress	plastid	41.37	53.14
Os08t0230300-00	Rice	cytosol, endoplasmic reticulum, nucleus	37.78	51.79
TraesCS7A01G291800.1	Wheat	cytosol	36.65	50.68
TraesCS7B01G197900.1	Wheat	cytosol	36.48	50.45
TraesCS7D01G290000.1	Wheat	cytosol	36.48	50.45
HORVU7Hr1G067710.13	Barley	cytosol	35.99	49.33
GSMUA_Achr1P23600_001	Banana	plastid	39.41	46.81
Zm00001d024365_P001	Maize	cytosol, nucleus, peroxisome	37.3	46.17
OQU80127	Sorghum	cytosol, nucleus, peroxisome	37.46	44.57
Solyc07g017750.2.1	Tomato	mitochondrion	17.59	19.6
Solyc01g005300.2.1	Tomato	cytosol	15.64	15.82
Solyc07g017740.2.1	Tomato	cytosol	0.49	1.94

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	Gene3D:2.120.10.80	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915	UniProt:K4C761	InterPro:Kelch-typ_b-propeller
PFAM:PF00646	PFAM:PF13415	PFAM:PF13418	PFscan:PS50181	PANTHER:PTHR23244	PANTHER:PTHR23244:SF324
SUPFAM:SSF117281	SUPFAM:SSF81383	EnsemblPlantsGene:Solyc06g063300.2	EnsemblPlants:Solyc06g063300.2.1	UniParc:UPI0002766D17	SEG:seg

Description

No Description!

Coordinates

chr6:+:40003712..40009229

Molecular Weight (calculated)

67756.5 Da

IEP (calculated)

7.002

GRAVY (calculated)

-0.295

Length

614 amino acids

Sequence
(BLAST)

001: MATSSSCSSP YTNGSSPITT IAQDHLFSIL LLLPLDSIFC FALTCKKFRS LTYSDSLWES LCRRDWGNST IDALRSFAVD DKQQQFPWKK LYQQIYQLDS
101: VYCRRLLTHP LGGEELILPR PRASHSLNFV SGSLVLFGGG CEGGRHLDDT WVAYVGNDFK RILKWNKIGS GVPSGRFGHS CVVIGDSLVL FGGINDHGAR
201: QNDTWIGQVA VHDAFGITLS WRLLDVGSVM PPPRGAHAAC SMDKRRMLIH GGIGLSGLRL GDTWVLELSE NLHLGVWQEI ATHPSPPSRS GHTLTPVGGN
301: QTILFGGRGL GYEVLNDVWL FDTSDSHCRW VQLLFDLQNI PQGLTLPRVG HSANLIIGGR LLIYGGEDSY RHRKNDFWVL DISSVTSIMQ SGSPPSPERS
401: MTKLWRRLKS KGDNPCGRSF HRACVDPSGR NLYIFGGMVD GLLNPAESSG LRFDGELFLV ELFIGSEELL SIGSAGDGQE EEEEQQIQEQ QLHITSKTPI
501: IETVKKMFSF PQTSANYWSR FESLIKQGKA YFSPPTLDFR DSQEAQARAE GGAAPGEKVK EAVLKSLDKS KAALEESAKS AAKLAGEAVS KTTNKMKRTF
601: SFGDRDPGHQ EDEL

Best Arabidopsis Sequence Match ( AT1G51550.1 )
(BLAST)

001: MAAESTRNSS PPSTSQSSSP IINLPDDHLL TILLLLPVDS ILSFSMTCKR YKSLACSDSL WEALCEREWG PTSVDALKLS SLRDGFSWML MFQRVYKMDS
101: VCCHKISDPD DDDEESSSFP IPRASHSLNF VNDHLVLFGG GCQGGRHLDD TWTSYVDKSN QSILKWKKVK SGTPSGRFGH TCIVIGEYLL LFGGINDRGE
201: RLNDTWIGQV FCHEGLSWKL LNVGSLQRPR PPPRGAHSAC CIAEKKMVVH GGIGLNGVRL GDTWILELSE DFSSGTWHMV ESPQLPPPRS GHTLTCIREN
301: QVVLFGGRGL GYDVLDDVWI LDIQEPCEEK WIQIFYDFQD VPEYASLPRV GHSATLVLGG RILIYGGEDS YRHRKDDFWV LDVKTIPSSG LKPQGLSLNG
401: SSVWKKLDRI SYGPKSRSFH RACADCSGRF LYVFGGMVDG LLQPAASSGL RFDGELFMVE LVLGFSDLDH QQRPGKSM

Arabidopsis Description

F-box/kelch-repeat protein At1g51550 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8K7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.