Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- endoplasmic reticulum 1
- plastid 3
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001813.1-P | Field mustard | cytosol, endoplasmic reticulum, plastid | 66.74 | 69.35 |
| CDX82216 | Canola | cytosol, endoplasmic reticulum, plastid | 65.9 | 68.03 |
| CDY32406 | Canola | cytosol, endoplasmic reticulum, plastid | 65.48 | 67.75 |
| KRH47295 | Soybean | endoplasmic reticulum, plasma membrane, plastid | 54.81 | 57.33 |
| KRH44610 | Soybean | endoplasmic reticulum, nucleus, peroxisome | 51.67 | 56.14 |
| VIT_09s0054g00610.t01 | Wine grape | plastid | 53.56 | 54.12 |
| PGSC0003DMT400068170 | Potato | endoplasmic reticulum, plasma membrane, plastid | 52.3 | 53.65 |
| Os08t0230300-00 | Rice | cytosol, endoplasmic reticulum, nucleus | 47.28 | 50.45 |
| TraesCS7A01G291800.1 | Wheat | cytosol | 45.19 | 48.65 |
| TraesCS7D01G290000.1 | Wheat | cytosol | 44.98 | 48.42 |
| TraesCS7B01G197900.1 | Wheat | cytosol | 44.98 | 48.42 |
| HORVU7Hr1G067710.13 | Barley | cytosol | 43.72 | 46.65 |
| GSMUA_Achr1P23600_001 | Banana | plastid | 48.33 | 44.68 |
| Zm00001d024365_P001 | Maize | cytosol, nucleus, peroxisome | 45.4 | 43.75 |
| Solyc06g063300.2.1 | Tomato | endoplasmic reticulum, plastid | 53.14 | 41.37 |
| OQU80127 | Sorghum | cytosol, nucleus, peroxisome | 44.56 | 41.28 |
| AT2G18915.2 | Thale cress | nucleus | 21.34 | 16.69 |
| AT1G68050.1 | Thale cress | cytosol | 20.92 | 16.16 |
| AT5G57360.2 | Thale cress | nucleus | 20.92 | 15.97 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:19.2.2.8.1.4.6 | Gene3D:2.120.10.80 | EntrezGene:841580 | UniProt:A0A178W9S1 | ProteinID:AAG52632.1 |
| ProteinID:AEE32682.1 | EMBL:AK175424 | EMBL:AK175506 | ArrayExpress:AT1G51550 | EnsemblPlantsGene:AT1G51550 | RefSeq:AT1G51550 |
| TAIR:AT1G51550 | RefSeq:AT1G51550-TAIR-G | EnsemblPlants:AT1G51550.1 | TAIR:AT1G51550.1 | EMBL:AY087885 | Unigene:At.69747 |
| EMBL:BT029162 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | RefSeq:NP_564592.1 | ProteinID:OAP14936.1 | PFAM:PF12937 |
| PFAM:PF13418 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0004507 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50181 |
| PANTHER:PTHR23244 | PANTHER:PTHR23244:SF324 | UniProt:Q9C8K7 | SUPFAM:SSF117281 | SUPFAM:SSF81383 | UniParc:UPI00000AA098 |
| SEG:seg | : | : | : | : | : |
Description
F-box/kelch-repeat protein At1g51550 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8K7]
Coordinates
chr1:-:19117032..19119382
Molecular Weight (calculated)
53170.4 Da
IEP (calculated)
6.342
GRAVY (calculated)
-0.232
Length
478 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAESTRNSS PPSTSQSSSP IINLPDDHLL TILLLLPVDS ILSFSMTCKR YKSLACSDSL WEALCEREWG PTSVDALKLS SLRDGFSWML MFQRVYKMDS
101: VCCHKISDPD DDDEESSSFP IPRASHSLNF VNDHLVLFGG GCQGGRHLDD TWTSYVDKSN QSILKWKKVK SGTPSGRFGH TCIVIGEYLL LFGGINDRGE
201: RLNDTWIGQV FCHEGLSWKL LNVGSLQRPR PPPRGAHSAC CIAEKKMVVH GGIGLNGVRL GDTWILELSE DFSSGTWHMV ESPQLPPPRS GHTLTCIREN
301: QVVLFGGRGL GYDVLDDVWI LDIQEPCEEK WIQIFYDFQD VPEYASLPRV GHSATLVLGG RILIYGGEDS YRHRKDDFWV LDVKTIPSSG LKPQGLSLNG
401: SSVWKKLDRI SYGPKSRSFH RACADCSGRF LYVFGGMVDG LLQPAASSGL RFDGELFMVE LVLGFSDLDH QQRPGKSM
101: VCCHKISDPD DDDEESSSFP IPRASHSLNF VNDHLVLFGG GCQGGRHLDD TWTSYVDKSN QSILKWKKVK SGTPSGRFGH TCIVIGEYLL LFGGINDRGE
201: RLNDTWIGQV FCHEGLSWKL LNVGSLQRPR PPPRGAHSAC CIAEKKMVVH GGIGLNGVRL GDTWILELSE DFSSGTWHMV ESPQLPPPRS GHTLTCIREN
301: QVVLFGGRGL GYDVLDDVWI LDIQEPCEEK WIQIFYDFQD VPEYASLPRV GHSATLVLGG RILIYGGEDS YRHRKDDFWV LDVKTIPSSG LKPQGLSLNG
401: SSVWKKLDRI SYGPKSRSFH RACADCSGRF LYVFGGMVDG LLQPAASSGL RFDGELFMVE LVLGFSDLDH QQRPGKSM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.