Factsheet for Bra001813.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, cytosol

Predictor Summary:

nucleus 2
endoplasmic reticulum 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82216	Canola	cytosol, endoplasmic reticulum, plastid	95.65	95.03
CDY32406	Canola	cytosol, endoplasmic reticulum, plastid	92.83	92.42
AT1G51550.1	Thale cress	plastid	69.35	66.74
KRH47295	Soybean	endoplasmic reticulum, plasma membrane, plastid	54.78	55.14
PGSC0003DMT400068170	Potato	endoplasmic reticulum, plasma membrane, plastid	54.57	53.86
KRH44610	Soybean	endoplasmic reticulum, nucleus, peroxisome	50.65	52.95
VIT_09s0054g00610.t01	Wine grape	plastid	53.7	52.22
Os08t0230300-00	Rice	cytosol, endoplasmic reticulum, nucleus	47.61	48.88
TraesCS7A01G291800.1	Wheat	cytosol	45.65	47.3
TraesCS7D01G290000.1	Wheat	cytosol	45.43	47.07
TraesCS7B01G197900.1	Wheat	cytosol	45.22	46.85
HORVU7Hr1G067710.13	Barley	cytosol	45.0	46.21
Zm00001d024365_P001	Maize	cytosol, nucleus, peroxisome	46.74	43.35
GSMUA_Achr1P23600_001	Banana	plastid	48.48	43.13
OQU80127	Sorghum	cytosol, nucleus, peroxisome	47.17	42.05
Solyc06g063300.2.1	Tomato	endoplasmic reticulum, plastid	55.0	41.21
Bra038831.1-P	Field mustard	nucleus	22.17	16.56
Bra038832.1-P	Field mustard	cytosol	21.52	16.28
Bra038830.1-P	Field mustard	nucleus	21.74	16.21

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	Gene3D:2.120.10.80	EnsemblPlantsGene:Bra001813	EnsemblPlants:Bra001813.1	EnsemblPlants:Bra001813.1-P
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	UniProt:M4CC83	PFAM:PF00646	PFAM:PF13418	PFscan:PS50181
PANTHER:PTHR23244	PANTHER:PTHR23244:SF324	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI000254062F	SEG:seg

Description

AT1G51550 (E=1e-176) | F-box family protein

Coordinates

chrA03:-:18607950..18609406

Molecular Weight (calculated)

50669.6 Da

IEP (calculated)

6.828

GRAVY (calculated)

-0.114

Length

460 amino acids

Sequence
(BLAST)

001: MAEIASTSSS RGHQSPPAPI MNLADDHLFT VLLLLPVDSI LSFSATCKRF RDLACSDSLW ESLWRREWGP SSAESVKSSG LLLPWMVLFK RVCKLDSVSC
101: HKISNLDDDD ESSLLPLPRA SHSLNFVTDY LVLFGGGREG GRHLDDTWTA YVGESNQKTL KWKKADSVTP GGRFGHTCVV IGDSLVLFGG INDRGERLND
201: TWIGRVGCHG KQLTWKLLAV LGSLKPPPRG AHAASCISEK TMVVQGGIGL SGVRLGDTWI LELSEDLNSG TWHEVVSNAL LPPRSGHTLT YIRENQVVLF
301: GGRGLGYDVL NDVWLLDTQE QCERWIQIFY DFRDLEESAS LPRVGHSATL ILGGRILIYG GEDTFRHKKD DFWALDVKTI PSKGLQVDGG AVCLNGSKAW
401: KRLDGVSYRP KGRSFHRACA DGSGRYVYVF GGMVDGLNLA VTSSLRFENE LFMVELILGL

Best Arabidopsis Sequence Match ( AT1G51550.1 )
(BLAST)

001: MAAESTRNSS PPSTSQSSSP IINLPDDHLL TILLLLPVDS ILSFSMTCKR YKSLACSDSL WEALCEREWG PTSVDALKLS SLRDGFSWML MFQRVYKMDS
101: VCCHKISDPD DDDEESSSFP IPRASHSLNF VNDHLVLFGG GCQGGRHLDD TWTSYVDKSN QSILKWKKVK SGTPSGRFGH TCIVIGEYLL LFGGINDRGE
201: RLNDTWIGQV FCHEGLSWKL LNVGSLQRPR PPPRGAHSAC CIAEKKMVVH GGIGLNGVRL GDTWILELSE DFSSGTWHMV ESPQLPPPRS GHTLTCIREN
301: QVVLFGGRGL GYDVLDDVWI LDIQEPCEEK WIQIFYDFQD VPEYASLPRV GHSATLVLGG RILIYGGEDS YRHRKDDFWV LDVKTIPSSG LKPQGLSLNG
401: SSVWKKLDRI SYGPKSRSFH RACADCSGRF LYVFGGMVDG LLQPAASSGL RFDGELFMVE LVLGFSDLDH QQRPGKSM

Arabidopsis Description

F-box/kelch-repeat protein At1g51550 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8K7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.