Factsheet for GSMUA_Achr1P23600_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0230300-00	Rice	cytosol, endoplasmic reticulum, nucleus	49.9	57.59
TraesCS7A01G291800.1	Wheat	cytosol	47.58	55.41
TraesCS7B01G197900.1	Wheat	cytosol	47.2	54.95
HORVU7Hr1G067710.13	Barley	cytosol	47.58	54.91
VIT_09s0054g00610.t01	Wine grape	plastid	50.1	54.76
TraesCS7D01G290000.1	Wheat	cytosol	47.0	54.73
Zm00001d024365_P001	Maize	cytosol, nucleus, peroxisome	51.26	53.43
KRH47295	Soybean	endoplasmic reticulum, plasma membrane, plastid	46.42	52.52
PGSC0003DMT400068170	Potato	endoplasmic reticulum, plasma membrane, plastid	47.2	52.36
KRH44610	Soybean	endoplasmic reticulum, nucleus, peroxisome	44.29	52.05
OQU80127	Sorghum	cytosol, nucleus, peroxisome	51.45	51.55
Bra001813.1-P	Field mustard	cytosol, endoplasmic reticulum, plastid	43.13	48.48
AT1G51550.1	Thale cress	plastid	44.68	48.33
CDY32406	Canola	cytosol, endoplasmic reticulum, plastid	42.94	48.05
CDX82216	Canola	cytosol, endoplasmic reticulum, plastid	42.75	47.73
Solyc06g063300.2.1	Tomato	endoplasmic reticulum, plastid	46.81	39.41
GSMUA_Achr7P15880_001	Banana	cytosol	17.8	16.11
GSMUA_Achr7P11200_001	Banana	cytosol	17.21	15.56
GSMUA_Achr3P05120_001	Banana	nucleus	17.02	15.09

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	Gene3D:2.120.10.80	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr1G23600_001	EnsemblPlants:GSMUA_Achr1P23600_001	EnsemblPlants:GSMUA_Achr1T23600_001	InterPro:IPR001810
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	UniProt:M0S2G7	PFAM:PF00646	PFAM:PF13415	PFAM:PF13418
PFAM:PF13854	PFscan:PS50181	PANTHER:PTHR23244	PANTHER:PTHR23244:SF324	SUPFAM:SSF117281	SUPFAM:SSF81383
UniParc:UPI000296C14E	SEG:seg	:	:	:	:

Description

F-box/kelch-repeat protein At1g51550 [Source:GMGC_GENE;Acc:GSMUA_Achr1G23600_001]

Coordinates

chr1:-:17999990..18004659

Molecular Weight (calculated)

56813.7 Da

IEP (calculated)

8.536

GRAVY (calculated)

-0.170

Length

517 amino acids

Sequence
(BLAST)

001: MKPTAETGHL SAFPAPTKVL KKAPLMASIP PPLSPSSSSS SSYSPSNYSS SSITQMGSDH IISILLLLPV ESILSFSMTC RRFRSVASSD SVWEPICRRE
101: WGSGGVDALV ASLSQQERQR LSWKRLYAQV SRPSSLSCRR LSSKSGAFPN PRASHSLNFI SDWLVLFGGG CEGGQPFFAS GLTFSIHIHV YIGNSFNCLS
201: RHLDDTWVAY IGNGHNRVIC WQHVNSGVPS GRFGQTCTLL SKFLVLFGGI NDNGERLNDT WIGEVLYEGQ IDLRIAWRLL DVGTLVPPPR GAHAACCAGD
301: QRVMIHGGIG SYGLRFDDTW ILDLSDDFKS GRWHQVMNAQ SSPPPRSGHS LTWIGGTYMV LFGGRGSGYE VLNDVWLFDV GGDGPEWKEL KLSGLPSEMP
401: LPRVGHSATL ILGNKILIYG GEDSERHRKD DFWVLDIGAL RSFQTAGSKK TPRKLWKRLS IEGHSPQYRS FHGACTDRSG HYVYVFGGMV DGVVHPAEAY
501: GLSFNGELYQ VKLVLQL

Best Arabidopsis Sequence Match ( AT1G51550.1 )
(BLAST)

001: MAAESTRNSS PPSTSQSSSP IINLPDDHLL TILLLLPVDS ILSFSMTCKR YKSLACSDSL WEALCEREWG PTSVDALKLS SLRDGFSWML MFQRVYKMDS
101: VCCHKISDPD DDDEESSSFP IPRASHSLNF VNDHLVLFGG GCQGGRHLDD TWTSYVDKSN QSILKWKKVK SGTPSGRFGH TCIVIGEYLL LFGGINDRGE
201: RLNDTWIGQV FCHEGLSWKL LNVGSLQRPR PPPRGAHSAC CIAEKKMVVH GGIGLNGVRL GDTWILELSE DFSSGTWHMV ESPQLPPPRS GHTLTCIREN
301: QVVLFGGRGL GYDVLDDVWI LDIQEPCEEK WIQIFYDFQD VPEYASLPRV GHSATLVLGG RILIYGGEDS YRHRKDDFWV LDVKTIPSSG LKPQGLSLNG
401: SSVWKKLDRI SYGPKSRSFH RACADCSGRF LYVFGGMVDG LLQPAASSGL RFDGELFMVE LVLGFSDLDH QQRPGKSM

Arabidopsis Description

F-box/kelch-repeat protein At1g51550 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8K7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.