Factsheet for PGSC0003DMT400068170

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, plasma membrane

Predictor Summary:

nucleus 2
plastid 2
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g063300.2.1	Tomato	endoplasmic reticulum, plastid	95.92	72.8
VIT_09s0054g00610.t01	Wine grape	plastid	62.66	61.73
KRH47295	Soybean	endoplasmic reticulum, plasma membrane, plastid	59.87	61.05
KRH44610	Soybean	endoplasmic reticulum, nucleus, peroxisome	55.15	58.41
Bra001813.1-P	Field mustard	cytosol, endoplasmic reticulum, plastid	53.86	54.57
CDY32406	Canola	cytosol, endoplasmic reticulum, plastid	54.08	54.55
CDX82216	Canola	cytosol, endoplasmic reticulum, plastid	53.86	54.21
AT1G51550.1	Thale cress	plastid	53.65	52.3
Os08t0230300-00	Rice	cytosol, endoplasmic reticulum, nucleus	49.79	51.79
TraesCS7A01G291800.1	Wheat	cytosol	48.07	50.45
TraesCS7B01G197900.1	Wheat	cytosol	47.85	50.23
TraesCS7D01G290000.1	Wheat	cytosol	47.85	50.23
HORVU7Hr1G067710.13	Barley	cytosol	47.21	49.11
GSMUA_Achr1P23600_001	Banana	plastid	52.36	47.2
Zm00001d024365_P001	Maize	cytosol, nucleus, peroxisome	49.79	46.77
OQU80127	Sorghum	cytosol, nucleus, peroxisome	50.21	45.35
PGSC0003DMT400051416	Potato	cytosol	20.82	15.3

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:102581460	MapMan:19.2.2.8.1.4.6	Gene3D:2.120.10.80	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller
UniProt:M1CIJ9	PFAM:PF00646	PFAM:PF13418	EnsemblPlantsGene:PGSC0003DMG400026513	PGSC:PGSC0003DMG400026513	EnsemblPlants:PGSC0003DMT400068170
PFscan:PS50181	PANTHER:PTHR23244	PANTHER:PTHR23244:SF324	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI00029592BE
RefSeq:XP_006357446.1	SEG:seg	:	:	:	:

Description

Ubiquitin-protein ligase [Source:PGSC_GENE;Acc:PGSC0003DMG400026513]

Coordinates

chr6:-:48061565..48065951

Molecular Weight (calculated)

51701.9 Da

IEP (calculated)

7.548

GRAVY (calculated)

-0.121

Length

466 amino acids

Sequence
(BLAST)

001: MATSSSCSSP YTNGSSPITT IAQDHLFSIL LLLPLDSIFC FALTCKKFRS LTYSDSLWES LCRRDWGNST IDALRSFAVD GKQQQFPWKK LYQQIYQLDS
101: VYCRRLLTHP QGGEELLLPR PRASHSLNFV SGCLVLFGGG CEGGRHLDDT WVAYAGNDFK RILEWNKIES GVPSGRFGHS CVVIGDYLVL FGGINDHGAR
201: QNDTWIGQVA VHDAFGITLS WRLLDVGSIV PPPRGAHAAC SMDKRRMLIH GGIGLSGLRL GDTWVLELSE NLHLGVWQEI VTHPSPPSRS GHTLTPVGGN
301: QTILFGGRGL GYEVLNDVWL FDTSDGHWRW VQLLFDLQNI PQGLTLPRVG HSANLIIGGR LLIYGGEDSY RHRKNDFWVL DISSVTSIMQ SGSPPSPDRS
401: MTKLWRRLKS KGDNPCGRSF HRACVDPSGR NLYIFGGMVD GLLNPAESSV LRFDGELFLV ELLLQC

Best Arabidopsis Sequence Match ( AT1G51550.1 )
(BLAST)

001: MAAESTRNSS PPSTSQSSSP IINLPDDHLL TILLLLPVDS ILSFSMTCKR YKSLACSDSL WEALCEREWG PTSVDALKLS SLRDGFSWML MFQRVYKMDS
101: VCCHKISDPD DDDEESSSFP IPRASHSLNF VNDHLVLFGG GCQGGRHLDD TWTSYVDKSN QSILKWKKVK SGTPSGRFGH TCIVIGEYLL LFGGINDRGE
201: RLNDTWIGQV FCHEGLSWKL LNVGSLQRPR PPPRGAHSAC CIAEKKMVVH GGIGLNGVRL GDTWILELSE DFSSGTWHMV ESPQLPPPRS GHTLTCIREN
301: QVVLFGGRGL GYDVLDDVWI LDIQEPCEEK WIQIFYDFQD VPEYASLPRV GHSATLVLGG RILIYGGEDS YRHRKDDFWV LDVKTIPSSG LKPQGLSLNG
401: SSVWKKLDRI SYGPKSRSFH RACADCSGRF LYVFGGMVDG LLQPAASSGL RFDGELFMVE LVLGFSDLDH QQRPGKSM

Arabidopsis Description

F-box/kelch-repeat protein At1g51550 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8K7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.