Factsheet for PGSC0003DMT400051416

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400002842
PGSC0003DMT400007088
PGSC0003DMT400047370
PGSC0003DMT400048370
PGSC0003DMT400050252
PGSC0003DMT400050273
PGSC0003DMT400060263
PGSC0003DMT400083080
PGSC0003DMT400083086

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68050.1	PGSC0003DMT400002842	AT1G22770.1	17704763
AT1G68050.1	PGSC0003DMT400048370	AT1G22770.1	17704763
AT1G68050.1	PGSC0003DMT400002842	AT1G22770.1	17872410
AT1G68050.1	PGSC0003DMT400048370	AT1G22770.1	17872410
AT1G68050.1	PGSC0003DMT400007088	AT3G05840.1	14749489
AT1G68050.1	PGSC0003DMT400050273	AT3G47500.1	16002617
AT1G68050.1	PGSC0003DMT400083080	AT3G47500.1	16002617
AT1G68050.1	PGSC0003DMT400060263	AT5G08590.1	14749489
AT1G68050.1	PGSC0003DMT400060263	AT5G08590.1	17872410
AT1G68050.1	PGSC0003DMT400060263	AT5G08590.1	21798944
AT1G68050.1	PGSC0003DMT400047370	AT5G39660.1	16002617
AT1G68050.1	PGSC0003DMT400050252	AT5G61380.1	14654842
AT1G68050.1	PGSC0003DMT400083086	AT5G61380.1	14654842
AT1G68050.1	PGSC0003DMT400050273	AT5G62430.1	16002617
AT1G68050.1	PGSC0003DMT400083080	AT5G62430.1	16002617

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g005300.2.1	Tomato	cytosol	83.6	87.31
KRH60424	Soybean	cytosol	80.28	82.1
VIT_01s0011g05810.t01	Wine grape	cytosol	79.5	81.82
AT1G68050.1	Thale cress	cytosol	74.76	76.58
KRH41723	Soybean	cytosol, extracellular, nucleus	77.6	76.04
GSMUA_Achr7P11200_001	Banana	cytosol	64.67	71.68
OQU83614	Sorghum	cytosol	66.4	70.88
Zm00001d007445_P001	Maize	cytosol	67.67	70.44
Zm00001d053091_P001	Maize	cytosol	68.14	69.9
Os11t0547000-01	Rice	cytosol	69.09	69.52
TraesCS4B01G157500.1	Wheat	cytosol	64.83	66.29
TraesCS4A01G164000.1	Wheat	cytosol	65.14	65.97
PGSC0003DMT400068170	Potato	endoplasmic reticulum, plasma membrane, plastid	15.3	20.82

Protein Annotations

MapMan:19.2.2.8.1.4.4	Gene3D:2.120.10.80	MapMan:26.1.2.3.1	Gene3D:3.30.450.20	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006355
GO:GO:0007275	GO:GO:0007623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628
GO:GO:0009637	GO:GO:0009791	GO:GO:0009908	GO:GO:0009911	GO:GO:0009987	GO:GO:0010468
InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR000014	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_2
UniProt:M1BRQ0	InterPro:PAS	InterPro:PAS-like_dom_sf	PFAM:PF00646	PFAM:PF07646	PFAM:PF13415
PFAM:PF13418	PFAM:PF13426	EnsemblPlantsGene:PGSC0003DMG400019971	PGSC:PGSC0003DMG400019971	EnsemblPlants:PGSC0003DMT400051416	PFscan:PS50112
PANTHER:PTHR23244	PANTHER:PTHR23244:SF263	SUPFAM:SSF117281	SUPFAM:SSF50965	SUPFAM:SSF55785	SUPFAM:SSF81383
TIGRFAMs:TIGR00229	UniParc:UPI00029529AE	SEG:seg	:	:	:

Description

Circadian clock-associated FKF1 [Source:PGSC_GENE;Acc:PGSC0003DMG400019971]

Coordinates

chr1:+:531784..536380

Molecular Weight (calculated)

70390.4 Da

IEP (calculated)

4.803

GRAVY (calculated)

-0.340

Length

634 amino acids

Sequence
(BLAST)

001: MEEEEENMRR EKRLKCINME EDEDEDEEEG EILDDDDDDD EYEEEIENIE VPSQPVGFFY PSTTPSSIVV SDALDPDLPV IYVNSAFESS TGYRADEVLG
101: RNCRFLQFRD PRAQRRHPLV DPVVVSEIRR CLEEGVDFQG ELLNFKKDGT PVVNRLRLAP IHSDDGTVTH IIGIQMFSET KIDLNTVSYP VFKETCQPHC
201: DESSEYSIKS GNLLHREMCG ILQLSDEVLA HNILSRLTPR DVASIGSVCR RIRQLTKNEH VRKMVCQNAW GADVTGVLEH MTKKLAWGRL ARELTTLEAV
301: CWKKLTVRGA VEPSRCNFSA CAAGNRLVLF GGEGVNMQPM DDTFVLNLDA ANPEWRRVSV KSSPPGRWGH TLSCLNGSWL VVFGGCGREG LLNDVFVLDL
401: DAKQPTWKEV SGGTPPLPRS WHSSCTMEGS KLVVSGGCTD AGVLLSDTYL LDLANDKPTW REIPTTWAPP SRLGHSLSAY GKTKILMFGG LAKSGHLRLR
501: SGESYTIDLE DERPQWRQLE CGAFTGVGSQ NAVVPPPRLD HVAVTMPCGR IIIFGGSIAG LHSPSQLFLL DPSEEKPLWR TLNVPGQPPK FAWGHSTCVV
601: GGTRVLVLGG HTGEDWVLNE LYELCLASKQ DSDA

Best Arabidopsis Sequence Match ( AT1G68050.1 )
(BLAST)

001: MAREHAIGEA TGKRKKRGRV EEAEEYCNDG IEEQVEDEKL PLEVGMFYYP MTPPSFIVSD ALEPDFPLIY VNRVFEVFTG YRADEVLGRN CRFLQYRDPR
101: AQRRHPLVDP VVVSEIRRCL EEGIEFQGEL LNFRKDGTPL VNRLRLAPIR DDDGTITHVI GIQVFSETTI DLDRVSYPVF KHKQQLDQTS ECLFPSGSPR
201: FKEHHEDFCG ILQLSDEVLA HNILSRLTPR DVASIGSACR RLRQLTKNES VRKMVCQNAW GKEITGTLEI MTKKLRWGRL ARELTTLEAV CWRKFTVGGI
301: VQPSRCNFSA CAVGNRLVLF GGEGVNMQPL DDTFVLNLDA ECPEWQRVRV TSSPPGRWGH TLSCLNGSWL VVFGGCGRQG LLNDVFVLDL DAKHPTWKEV
401: AGGTPPLPRS WHSSCTIEGS KLVVSGGCTD AGVLLSDTFL LDLTTDKPTW KEIPTSWAPP SRLGHSLSVF GRTKILMFGG LANSGHLKLR SGEAYTIDLE
501: DEEPRWRELE CSAFPGVVVP PPRLDHVAVS MPCGRVIIFG GSIAGLHSPS QLFLIDPAEE KPSWRILNVP GKPPKLAWGH STCVVGGTRV LVLGGHTGEE
601: WILNELHELC LASRQDSDL

Arabidopsis Description

ADO3FKF1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8F6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.