Factsheet for PGSC0003DMT400083086

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001574
PGSC0003DMT400008944
PGSC0003DMT400035000
PGSC0003DMT400044195
PGSC0003DMT400047079
PGSC0003DMT400051416
PGSC0003DMT400051746
PGSC0003DMT400051934

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61380.1	PGSC0003DMT400008944	AT1G33470.1	21798944
AT5G61380.1	PGSC0003DMT400051416	AT1G68050.1	14654842
AT5G61380.1	PGSC0003DMT400035000	AT2G33410.1	21798944
AT5G61380.1	PGSC0003DMT400044195	AT2G33410.1	21798944
AT5G61380.1	PGSC0003DMT400047079	AT2G46970.1	11828029
AT5G61380.1	PGSC0003DMT400051746	AT3G24650.1	10743655
AT5G61380.1	PGSC0003DMT400051934	AT3G24650.1	10743655
AT5G61380.1	PGSC0003DMT400001574	AT5G24470.1	20407420

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g069690.2.1	Tomato	nucleus	83.24	91.04
PGSC0003DMT400050252	Potato	nucleus	67.58	67.33
VIT_17s0000g06570.t01	Wine grape	nucleus	61.93	61.71
KRH54582	Soybean	nucleus	59.74	58.78
KRH63298	Soybean	nucleus	59.2	58.04
KRH56889	Soybean	nucleus	59.38	56.7
KRH03510	Soybean	nucleus	59.02	55.96
Bra035933.1-P	Field mustard	nucleus	49.18	53.05
CDX87210	Canola	nucleus	48.27	52.89
CDY02151	Canola	nucleus	49.73	49.91
CDY64140	Canola	nucleus	50.46	48.34
Bra012964.1-P	Field mustard	nucleus	50.46	48.09
AT5G61380.1	Thale cress	nucleus	52.82	46.93
GSMUA_Achr2P04570_001	Banana	nucleus	44.99	44.99
GSMUA_Achr9P19550_001	Banana	nucleus	42.99	44.78
GSMUA_Achr10P...	Banana	nucleus	43.53	44.1
Os02t0618200-01	Rice	nucleus	41.35	43.82
EES05438	Sorghum	nucleus	41.71	43.7
TraesCS6B01G253900.1	Wheat	nucleus	40.62	43.22
Zm00001d017241_P002	Maize	nucleus	40.62	43.13
HORVU6Hr1G057630.1	Barley	nucleus	40.98	43.1
Zm00001d051114_P001	Maize	nucleus	40.62	40.84
TraesCS6A01G227900.2	Wheat	endoplasmic reticulum, plasma membrane, plastid	40.98	40.04
TraesCS6D01G207100.2	Wheat	endoplasmic reticulum, nucleus, plastid	40.8	39.58
Zm00001d003811_P001	Maize	cytosol	20.4	34.78
Zm00001d018818_P001	Maize	cytosol	18.21	32.89
Zm00001d043140_P001	Maize	cytosol	18.21	32.89
Zm00001d044406_P001	Maize	cytosol	17.85	32.24
Zm00001d005366_P001	Maize	cytosol	21.68	21.96
PGSC0003DMT400029402	Potato	nucleus	22.04	18.91
PGSC0003DMT400001574	Potato	nucleus	21.13	16.98

Protein Annotations

EntrezGene:102582324	MapMan:27.1.3	Gene3D:3.40.50.2300	InterPro:CCT_domain	InterPro:CheY-like_superfamily	GO:GO:0000160
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	InterPro:IPR001789
InterPro:IPR010402	UniProt:M1D6G5	PFAM:PF00072	PFAM:PF06203	EnsemblPlantsGene:PGSC0003DMG400033048	PGSC:PGSC0003DMG400033048
EnsemblPlants:PGSC0003DMT400083086	PFscan:PS50110	PFscan:PS51017	PANTHER:PTHR43874	PANTHER:PTHR43874:SF1	SMART:SM00448
SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	UniParc:UPI000295A184	RefSeq:XP_006354770.1	SEG:seg	:

Description

Sensory transduction histidine kinase [Source:PGSC_GENE;Acc:PGSC0003DMG400033048]

Coordinates

chr6:-:51538785..51545828

Molecular Weight (calculated)

62417.0 Da

IEP (calculated)

6.618

GRAVY (calculated)

-0.625

Length

549 amino acids

Sequence
(BLAST)

001: MEKNETVRTG DGFIDRSKVR ILLCDNDAKS SEEVFTLLCK CSYQVISVRS PRQVIDALNA EGPHIDLILS EVDLPMSKGF KMLKYIMRDK QLRRIPVIMM
101: SSQDEVSIVI KCLKFGAADY LVKPLRTNEL LNLWTHMWRR RRMLGLSEKN ILSYDFNLVV SEPSDHNTNS TTLLSDDTDD KSRKCINPEM CPSTMLQEEA
201: RYKSIPSTDA APVETAVVVP FEHQPDAPGT DDQRTGEISL FPKKSELKIG ESSAFFTYVK SSLPKSNGQS PTSIHGSVPQ QLGIEEKTSL GGHEHIDTNI
301: QVTGDVESHL QGDGYPKSNN IPKSLSIERS CTPPLSQEFP HHRISKMEEF SQVHMHLKNE AQHGVSSFHA QTPYPYYISG VMNQVMMPST QIYHESLQHL
401: HNHANSAMLP QYNYMPRYPH MHGISSYPFY PIGMCFQPGQ LPEAHPWHSF GSSSSAEIKV SKVDLRETAL MKFRQKRKER CFDKKIRYIN RKQLAEQRPR
501: LRGQFVRKAN GVNVDVNGQP SSAGNDDVEE EEEEEVQIEY LDSSHEDDL

Best Arabidopsis Sequence Match ( AT5G61380.1 )
(BLAST)

001: MDLNGECKGG DGFIDRSRVR ILLCDNDSTS LGEVFTLLSE CSYQVTAVKS ARQVIDALNA EGPDIDIILA EIDLPMAKGM KMLRYITRDK DLRRIPVIMM
101: SRQDEVPVVV KCLKLGAADY LVKPLRTNEL LNLWTHMWRR RRMLGLAEKN MLSYDFDLVG SDQSDPNTNS TNLFSDDTDD RSLRSTNPQR GNLSHQENEW
201: SVATAPVHAR DGGLGADGTA TSSLAVTAIE PPLDHLAGSH HEPMKRNSNP AQFSSAPKKS RLKIGESSAF FTYVKSTVLR TNGQDPPLVD GNGSLHLHRG
301: LAEKFQVVAS EGINNTKQAR RATPKSTVLR TNGQDPPLVN GNGSHHLHRG AAEKFQVVAS EGINNTKQAH RSRGTEQYHS QGETLQNGAS YPHSLERSRT
401: LPTSMESHGR NYQEGNMNIP QVAMNRSKDS SQVDGSGFSA PNAYPYYMHG VMNQVMMQSA AMMPQYGHQI PHCQPNHPNG MTGYPYYHHP MNTSLQHSQM
501: SLQNGQMSMV HHSWSPAGNP PSNEVRVNKL DRREEALLKF RRKRNQRCFD KKIRYVNRKR LAERRPRVKG QFVRKMNGVN VDLNGQPDSA DYDDEEEEEE
601: EEEEENRDSS PQDDALGT

Arabidopsis Description

APRR1Two-component response regulator-like APRR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.