Factsheet for VIT_17s0000g06570.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g05810.t01
VIT_05s0049g01660.t01
VIT_07s0005g02510.t01
VIT_07s0005g05400.t01
VIT_16s0098g00900.t01
VIT_18s0089g00920.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61380.1	VIT_18s0089g00920.t01	AT1G33470.1	21798944
AT5G61380.1	VIT_01s0011g05810.t01	AT1G68050.1	14654842
AT5G61380.1	VIT_05s0049g01660.t01	AT2G33410.1	21798944
AT5G61380.1	VIT_07s0005g02510.t01	AT2G46970.1	11828029
AT5G61380.1	VIT_07s0005g05400.t01	AT3G24650.1	10743655
AT5G61380.1	VIT_16s0098g00900.t01	AT5G24470.1	20407420

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56889	Soybean	nucleus	69.15	66.26
KRH63298	Soybean	nucleus	66.97	65.89
PGSC0003DMT400050252	Potato	nucleus	65.88	65.88
KRH54582	Soybean	nucleus	66.61	65.77
Solyc03g115770.2.1	Tomato	nucleus	65.15	65.04
KRH03510	Soybean	nucleus	67.33	64.08
PGSC0003DMT400083086	Potato	nucleus	61.71	61.93
Solyc06g069690.2.1	Tomato	nucleus	54.27	59.56
CDX87210	Canola	nucleus	51.0	56.09
Bra035933.1-P	Field mustard	nucleus	51.36	55.6
CDY02151	Canola	nucleus	52.27	52.65
CDY64140	Canola	nucleus	53.72	51.66
Bra012964.1-P	Field mustard	nucleus	53.54	51.22
VIT_17s0000g06520.t01	Wine grape	cytosol	14.52	50.31
GSMUA_Achr9P19550_001	Banana	nucleus	47.73	49.91
GSMUA_Achr2P04570_001	Banana	nucleus	49.55	49.73
AT5G61380.1	Thale cress	nucleus	55.72	49.68
GSMUA_Achr10P...	Banana	nucleus	46.64	47.42
Os02t0618200-01	Rice	nucleus	43.19	45.95
HORVU6Hr1G057630.1	Barley	nucleus	42.11	44.44
TraesCS6B01G253900.1	Wheat	nucleus	41.38	44.19
Zm00001d017241_P002	Maize	nucleus	41.38	44.1
EES05438	Sorghum	nucleus	41.92	44.08
Zm00001d051114_P001	Maize	nucleus	41.56	41.94
VIT_17s0000g06560.t01	Wine grape	plastid	10.34	41.01
TraesCS6A01G227900.2	Wheat	endoplasmic reticulum, plasma membrane, plastid	41.56	40.75
TraesCS6D01G207100.2	Wheat	endoplasmic reticulum, nucleus, plastid	41.56	40.46
Zm00001d003811_P001	Maize	cytosol	22.32	38.2
VIT_06s0004g03660.t01	Wine grape	nucleus	7.08	37.86
Zm00001d018818_P001	Maize	cytosol	20.15	36.51
Zm00001d043140_P001	Maize	cytosol	20.15	36.51
Zm00001d044406_P001	Maize	cytosol	19.6	35.53
VIT_08s0040g03120.t01	Wine grape	nucleus	11.62	30.33
Zm00001d005366_P001	Maize	cytosol	24.86	25.28
VIT_15s0048g02540.t01	Wine grape	nucleus	23.23	19.97
VIT_16s0098g00900.t01	Wine grape	nucleus	23.23	18.6
VIT_13s0067g03390.t01	Wine grape	nucleus	25.95	18.6
VIT_06s0004g03650.t01	Wine grape	nucleus	14.88	17.01

Protein Annotations

EntrezGene:100258790	wikigene:100258790	MapMan:27.1.3	Gene3D:3.40.50.2300	ProteinID:CCB43069	ProteinID:CCB43069.1
InterPro:CCT_domain	InterPro:CheY-like_superfamily	UniProt:F6GT60	EMBL:FN594950	GO:GO:0000160	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0007623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0010031	GO:GO:0010468	GO:GO:0010629	InterPro:IPR001789	InterPro:IPR010402	EntrezGene:LOC100258790
wikigene:LOC100258790	PFAM:PF00072	PFAM:PF06203	PFscan:PS50110	PFscan:PS51017	PANTHER:PTHR43874
PANTHER:PTHR43874:SF1	SMART:SM00448	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	TIGR:TC65931	UniParc:UPI000210977D
ArrayExpress:VIT_17s0000g06570	EnsemblPlantsGene:VIT_17s0000g06570	EnsemblPlants:VIT_17s0000g06570.t01	unigene:Vvi.26439	RefSeq:XP_002281757	RefSeq:XP_002281757.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr17:+:7101564..7108734

Molecular Weight (calculated)

61852.8 Da

IEP (calculated)

5.544

GRAVY (calculated)

-0.660

Length

551 amino acids

Sequence
(BLAST)

001: MARNEIGSGG SNSKSSDSFI DRSNVRILLC DNDTKSSDEI FTLLCGCSYQ VTSVRSARQV IDALNAEGHD IDIILAEVDL PMTKGMKMLK YIMRDKELRR
101: IPIIMMSAQD EVSVVVKCLR LGAADYLVKP LRTNELLNLW THMWRRRRML GLAEKNILNY DFDVAASDPS DANTNSTMFS DDTDDKSRMS ANPEMVVSVH
201: QEDESNATID STDVAAEPPV VNQLECRPDV PGISDRRTGQ LLSGPKKSEL KVGESSAFFT YVKSSMIKTN SQGIPNINES APQHSRMEER VQAWSEKGVN
301: DTQEHENGEA WENYSQGDDF PSSNSIPDSL SVEMSCTPPA PIEFVQGRNS KGEEFSQVPI HPRNEHQVDI SGFPGHTAYP YCMSGVMNQV MMPSSAQLYP
401: KSLHDMQNNA TTSAMLPQYN HLPQCPPHVP GVASFPYYPV SICLQPGQMS TTHPWPSYGN SSSTEVKLGK VDRREAALIK FRQKRKERCF DKKIRYVNRK
501: RLAERRPRVR GQFVRKMNGV NVDLNGRPAS VDFDEDEEEY EEENASRDST P

Best Arabidopsis Sequence Match ( AT5G61380.1 )
(BLAST)

001: MDLNGECKGG DGFIDRSRVR ILLCDNDSTS LGEVFTLLSE CSYQVTAVKS ARQVIDALNA EGPDIDIILA EIDLPMAKGM KMLRYITRDK DLRRIPVIMM
101: SRQDEVPVVV KCLKLGAADY LVKPLRTNEL LNLWTHMWRR RRMLGLAEKN MLSYDFDLVG SDQSDPNTNS TNLFSDDTDD RSLRSTNPQR GNLSHQENEW
201: SVATAPVHAR DGGLGADGTA TSSLAVTAIE PPLDHLAGSH HEPMKRNSNP AQFSSAPKKS RLKIGESSAF FTYVKSTVLR TNGQDPPLVD GNGSLHLHRG
301: LAEKFQVVAS EGINNTKQAR RATPKSTVLR TNGQDPPLVN GNGSHHLHRG AAEKFQVVAS EGINNTKQAH RSRGTEQYHS QGETLQNGAS YPHSLERSRT
401: LPTSMESHGR NYQEGNMNIP QVAMNRSKDS SQVDGSGFSA PNAYPYYMHG VMNQVMMQSA AMMPQYGHQI PHCQPNHPNG MTGYPYYHHP MNTSLQHSQM
501: SLQNGQMSMV HHSWSPAGNP PSNEVRVNKL DRREEALLKF RRKRNQRCFD KKIRYVNRKR LAERRPRVKG QFVRKMNGVN VDLNGQPDSA DYDDEEEEEE
601: EEEEENRDSS PQDDALGT

Arabidopsis Description

APRR1Two-component response regulator-like APRR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.