Factsheet for VIT_15s0048g02540.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g03660.t01	Wine grape	nucleus	7.33	45.63
VIT_08s0040g03120.t01	Wine grape	nucleus	14.2	43.13
VIT_16s0098g00900.t01	Wine grape	nucleus	44.46	41.42
KRG97248	Soybean	nucleus	39.47	36.93
PGSC0003DMT400029402	Potato	nucleus	36.82	36.88
Solyc10g005030.2.1	Tomato	nucleus	36.51	36.28
KRH68964	Soybean	nucleus	39.16	36.27
EER99234	Sorghum	nucleus	35.41	36.03
Os09t0532400-01	Rice	nucleus	34.48	35.47
KRH47791	Soybean	nucleus	39.94	35.46
Zm00001d006212_P002	Maize	nucleus	34.95	35.44
KRH06354	Soybean	nucleus	38.53	34.99
TraesCS5B01G320500.1	Wheat	nucleus	32.76	34.54
GSMUA_Achr9P24280_001	Banana	nucleus	35.88	34.43
TraesCS5A01G320300.1	Wheat	nucleus	32.45	34.27
HORVU5Hr1G081620.4	Barley	nucleus	32.61	33.87
GSMUA_Achr4P04970_001	Banana	nucleus	33.54	32.98
Zm00001d021291_P002	Maize	mitochondrion, plastid	34.17	32.25
VIT_17s0000g06520.t01	Wine grape	cytosol	7.96	32.08
Zm00001d016258_P001	Maize	cytosol	10.3	31.88
TraesCS5D01G326200.3	Wheat	nucleus	29.33	30.18
VIT_06s0004g03650.t01	Wine grape	nucleus	21.53	28.63
GSMUA_Achr4P05170_001	Banana	nucleus	34.01	28.5
VIT_13s0067g03390.t01	Wine grape	nucleus	33.23	27.7
VIT_17s0000g06560.t01	Wine grape	plastid	5.46	25.18
VIT_17s0000g06570.t01	Wine grape	nucleus	19.97	23.23

Protein Annotations

EntrezGene:100253885	wikigene:100253885	MapMan:27.1.4	Gene3D:3.40.50.2300	ProteinID:CCB61302	ProteinID:CCB61302.1
InterPro:CCT_domain	InterPro:CheY-like_superfamily	ncoils:Coil	UniProt:F6I2Y5	EMBL:FN596739	GO:GO:0000160
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	InterPro:IPR001789	InterPro:IPR010402	EntrezGene:LOC100253885	wikigene:LOC100253885	PFAM:PF00072
PFAM:PF06203	PFscan:PS50110	PFscan:PS51017	PANTHER:PTHR43874	PANTHER:PTHR43874:SF11	SMART:SM00448
SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	TIGR:TC52852	UniParc:UPI0001984DF6	ArrayExpress:VIT_15s0048g02540	EnsemblPlantsGene:VIT_15s0048g02540
EnsemblPlants:VIT_15s0048g02540.t01	unigene:Vvi.24499	unigene:Vvi.6627	RefSeq:XP_002266192	RefSeq:XP_002266192.1	SEG:seg

Description

No Description!

Coordinates

chr15:-:16686274..16691769

Molecular Weight (calculated)

70552.6 Da

IEP (calculated)

6.302

GRAVY (calculated)

-0.612

Length

641 amino acids

Sequence
(BLAST)

001: MGEAVVSSDE VMEVELQEEE KRVREMEGKE EKEKSSSGVV RWGRFLPRMV LRVLLVEPDD STRQIIAALL RKCSYKVAAV SDGLKAWEAL KGEPQNVDLI
101: LTEVELPSIS GFALLSLIME DDICKKIPVI MMSSHDSISM VLKCMLKGAA DFLVKPVRKN ELRNLWQHVW RRHAPTSGHV SQNLSIAQNK VEVSSENNTA
201: SNHSSDYVVS AQKKKECSEK GSDVQSSSTT PYLEAESAYM ENMQGFSQLK CRSVSNLSNE EIRKHEDCIE LDKEPDRLES LTGGKIITLG SEVAPGNEGY
301: HSAAFRWEES HCRAKRVTSG DGVGPASHIE NTDITGENHG CNEKWIEPSS GAIDLISTFD NYPKDRNQFS SSNDGISKDG FAPQLELSLR RFQPCSSKNH
401: GSDERHTLNH SNSSAFSWYN NGKSLQPLFP TSAINCSELK EDASYSHERL FNQLPESTVG TSERCGAALS VTQGNMTTLV MGQSNQAGAA FPTSQLGLIP
501: VQGENNLEPM EELSHGSPVA GQSASSSLCN GVVSHLSSSV HGGICNRNDG NPTSNGAVVR TTAPESVNDE GLSNNDALKG MDSHHSTQRE AALMKFRLKR
601: KDRCFEKKVR YQSRKRLAEQ RPRVKGQFVR QVQTDTPTAD G

Best Arabidopsis Sequence Match ( AT5G24470.1 )
(BLAST)

001: MTSSEEVVEV TVVKAPEAGG GKLSRRKIRK KDAGVDGLVK WERFLPKIAL RVLLVEADDS TRQIIAALLR KCSYRVAAVP DGLKAWEMLK GKPESVDLIL
101: TEVDLPSISG YALLTLIMEH DICKNIPVIM MSTQDSVNTV YKCMLKGAAD YLVKPLRRNE LRNLWQHVWR RQTSLAPDSF PWNESVGQQK AEGASANNSN
201: GKRDDHVVSG NGGDAQSSCT RPEMEGESAD VEVSARDAVQ MECAKSQFNE TRLLANELQS KQAEAIDFMG ASFRRTGRRN REESVAQYES RIELDLSLRR
301: PNASENQSSG DRPSLHPSSA SAFTRYVHRP LQTQCSASPV VTDQRKNVAA SQDDNIVLMN QYNTSEPPPN APRRNDTSFY TGADSPGPPF SNQLNSWPGQ
401: SSYPTPTPIN NIQFRDPNTA YTSAMAPASL SPSPSSVSPH EYSSMFHPFN SKPEGLQDRD CSMDVDERRY VSSATEHSAI GNHIDQLIEK KNEDGYSLSV
501: GKIQQSLQRE AALTKFRMKR KDRCYEKKVR YESRKKLAEQ RPRIKGQFVR QVQSTQAP

Arabidopsis Description

APRR5Two-component response regulator-like APRR5 [Source:UniProtKB/Swiss-Prot;Acc:Q6LA42]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.