Factsheet for VIT_13s0067g03390.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g03650.t01	Wine grape	nucleus	35.37	56.43
VIT_06s0004g03660.t01	Wine grape	nucleus	7.41	55.34
Solyc04g049670.2.1	Tomato	nucleus	44.99	54.66
VIT_08s0040g03120.t01	Wine grape	nucleus	14.95	54.5
GSMUA_AchrUn_...	Banana	nucleus	53.84	54.05
GSMUA_Achr8P01990_001	Banana	cytosol, nucleus, plastid	51.89	53.92
OQU81435	Sorghum	mitochondrion	19.51	51.55
GSMUA_Achr9P04240_001	Banana	nucleus	50.85	49.68
Os07t0695100-01	Rice	nucleus	47.72	49.46
CDY31578	Canola	nucleus	31.08	48.68
Bra002512.1-P	Field mustard	nucleus	30.43	48.35
CDX80201	Canola	nucleus	29.52	48.2
Zm00001d007240_P001	Maize	nucleus	36.54	47.47
TraesCSU01G199500.3	Wheat	nucleus	26.92	46.83
Os03t0284100-01	Rice	nucleus	44.73	46.17
AT5G60100.2	Thale cress	nucleus	31.08	45.79
EER92434	Sorghum	nucleus	44.6	44.84
TraesCSU01G196100.2	Wheat	nucleus	39.27	44.61
TraesCS2A01G081900.2	Wheat	nucleus	39.27	44.54
TraesCS4B01G198700.1	Wheat	nucleus	43.82	44.46
TraesCS4A01G105300.1	Wheat	cytosol, mitochondrion, nucleus, plastid	38.36	44.29
HORVU4Hr1G057550.2	Barley	nucleus	43.69	44.27
TraesCS2D01G079600.2	Wheat	nucleus	38.62	44.13
TraesCS4D01G199600.1	Wheat	nucleus	43.43	43.77
TraesCSU01G221500.1	Wheat	nucleus	25.1	43.76
Zm00001d047761_P005	Maize	nucleus	43.56	43.73
HORVU2Hr1G013400.34	Barley	cytosol, nucleus, plastid	38.49	42.84
VIT_15s0048g02540.t01	Wine grape	nucleus	27.7	33.23
VIT_16s0098g00900.t01	Wine grape	nucleus	25.75	28.78
VIT_17s0000g06520.t01	Wine grape	cytosol	5.85	28.3
VIT_17s0000g06570.t01	Wine grape	nucleus	18.6	25.95
VIT_17s0000g06560.t01	Wine grape	plastid	4.29	23.74

Protein Annotations

EntrezGene:100256937	wikigene:100256937	MapMan:27.1.4	Gene3D:3.40.50.2300	ProteinID:CBI25329	ProteinID:CBI25329.3
InterPro:CCT_domain	InterPro:CheY-like_superfamily	UniProt:D7T497	EMBL:FN595514	GO:GO:0000160	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	InterPro:IPR001789	InterPro:IPR010402
EntrezGene:LOC100256937	wikigene:LOC100256937	PFAM:PF00072	PFAM:PF06203	PFscan:PS50110	PFscan:PS51017
PANTHER:PTHR43874	PANTHER:PTHR43874:SF34	SMART:SM00448	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	UniParc:UPI0001984756
ArrayExpress:VIT_13s0067g03390	EnsemblPlantsGene:VIT_13s0067g03390	EnsemblPlants:VIT_13s0067g03390.t01	unigene:Vvi.21586	RefSeq:XP_002275645	RefSeq:XP_002275645.2
RefSeq:XP_010658157.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr13:+:1859638..1891446

Molecular Weight (calculated)

84359.5 Da

IEP (calculated)

6.481

GRAVY (calculated)

-0.808

Length

769 amino acids

Sequence
(BLAST)

001: MRSFEMNVNG PWTKGSAELN HHAQDEQKNI RDKVVGEGHG LSEEDESRIN EDVEDLNDGR IGSVQAVQGV LHGPQQQPQG PIVRWERFLP LRSLKVLLVE
101: NDNSTRQVVS ALLRNCSYEV TAVANGVQAW SILDDLTNHV DLVLAEVALP SLSGIGLLCK IMNHKACKNI PVIMMSSHDS VGIVFKCLSK GAVDFFVKPI
201: RKNELKNLWQ HVWRKFHRFS GSESESESGI RTKKSAKSKS VAGSDNNTGS NDEDNGSIGL NVRDGSDNGS GTQSSWTKMA VEVDSPKPMQ PWDQSADPPD
301: STCAQVTQSW PEAFGNYQVP MTSSKDYQEQ DDELDNVEMG KDLKIGVPRN SNLQLQDDVV GANKDKFHEL TLKKDDEKLE NRQMDLNSNK PNDELDKEAV
401: DLMSVIANNT NPQKKSMGFK TPSGLSEVPE TKDKAMYDKK EIPSLELSLK RLRDTGGTDT NPHDQIIWRH SDLSAFSRYN SASTAIQAST GNVGSCSPLD
501: NSSEAAKTES MQNFQSNSNG TPPNQSSNGS SNNNMGSTTD DFYTKPAAFD DKPDSKSAVK HLQHSAFQPV QNTILADFAN ANTILAHPSA MPPQVQIQNH
601: HYYYHHHVHN ISQQQIRIHD DLALTNMAKS APQCGSSNVL NAPVEGYACN HSLNGSASGS NHGSNGQNGS TTAVNAQGTN MESDDGIAGK GGAGGGSGSG
701: SGSRSGVDQN QYAQREAALN KFRQKRKERC FEKKVRYQSR KRLAEQRPRI RGQFVRRVFH DINSEDADS

Best Arabidopsis Sequence Match ( AT5G02810.1 )
(BLAST)

001: MNANEEGEGS RYPITDRKTG ETKFDRVESR TEKHSEEEKT NGITMDVRNG SSGGLQIPLS QQTAATVCWE RFLHVRTIRV LLVENDDCTR YIVTALLRNC
101: SYEVVEASNG IQAWKVLEDL NNHIDIVLTE VIMPYLSGIG LLCKILNHKS RRNIPVIMMS SHDSMGLVFK CLSKGAVDFL VKPIRKNELK ILWQHVWRRC
201: QSSSGSGSES GTHQTQKSVK SKSIKKSDQD SGSSDENENG SIGLNASDGS SDGSGAQSSW TKKAVDVDDS PRAVSLWDRV DSTCAQVVHS NPEFPSNQLV
301: APPAEKETQE HDDKFEDVTM GRDLEISIRR NCDLALEPKD EPLSKTTGIM RQDNSFEKSS SKWKMKVGKG PLDLSSESPS SKQMHEDGGS SFKAMSSHLQ
401: DNREPEAPNT HLKTLDTNEA SVKISEELMH VEHSSKRHRG TKDDGTLVRD DRNVLRRSEG SAFSRYNPAS NANKISGGNL GSTSLQDNNS QDLIKKTEAA
501: YDCHSNMNES LPHNHRSHVG SNNFDMSSTT ENNAFTKPGA PKVSSAGSSS VKHSSFQPLP CDHHNNHASY NLVHVAERKK LPPQCGSSNV YNETIEGNNN
601: TVNYSVNGSV SGSGHGSNGP YGSSNGMNAG GMNMGSDNGA GKNGNGDGSG SGSGSGSGNL ADENKISQRE AALTKFRQKR KERCFRKKVR YQSRKKLAEQ
701: RPRVRGQFVR KTAAATDDND IKNIEDS

Arabidopsis Description

APRR7Two-component response regulator-like APRR7 [Source:UniProtKB/Swiss-Prot;Acc:Q93WK5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.