CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002512.1-P	Field mustard	nucleus	91.24	92.56
CDX80201	Canola	nucleus	88.39	92.14
AT5G60100.2	Thale cress	nucleus	78.41	73.75
CDY09224	Canola	nucleus	18.74	71.88
OQU81435	Sorghum	mitochondrion	24.64	41.58
CDY41558	Canola	nucleus	31.16	37.14
TraesCSU01G199500.3	Wheat	nucleus	30.96	34.39
CDX80047	Canola	nucleus	27.29	33.75
CDY48015	Canola	nucleus	30.96	32.97
CDY55688	Canola	nucleus	45.01	32.08
GSMUA_Achr8P01990_001	Banana	cytosol, nucleus, plastid	48.27	32.03
TraesCSU01G221500.1	Wheat	nucleus	28.72	31.97
CDY04868	Canola	nucleus	44.81	31.75
CDY10422	Canola	nucleus	45.21	31.67
CDX70344	Canola	nucleus	45.21	31.53
VIT_13s0067g03390.t01	Wine grape	nucleus	48.68	31.08
GSMUA_AchrUn_...	Banana	nucleus	48.27	30.94
GSMUA_Achr9P04240_001	Banana	nucleus	48.27	30.11
CDY59590	Canola	nucleus	29.74	29.98
TraesCS2A01G081900.2	Wheat	nucleus	38.9	28.17
Os07t0695100-01	Rice	nucleus	42.57	28.17
Solyc04g049670.2.1	Tomato	nucleus	36.25	28.12
TraesCS4B01G198700.1	Wheat	nucleus	43.38	28.1
TraesCS2D01G079600.2	Wheat	nucleus	38.49	28.08
TraesCSU01G196100.2	Wheat	nucleus	38.29	27.77
CDY19831	Canola	nucleus	28.11	27.77
CDY05436	Canola	nucleus	28.51	27.72
EER92434	Sorghum	nucleus	43.18	27.71
TraesCS4A01G105300.1	Wheat	cytosol, mitochondrion, nucleus, plastid	37.47	27.63
HORVU4Hr1G057550.2	Barley	nucleus	42.57	27.54
TraesCS4D01G199600.1	Wheat	nucleus	42.77	27.52
Os03t0284100-01	Rice	nucleus	41.75	27.52
Zm00001d047761_P005	Maize	nucleus	42.77	27.42
HORVU2Hr1G013400.34	Barley	cytosol, nucleus, plastid	38.49	27.35
CDX87123	Canola	nucleus	28.11	27.06
Zm00001d007240_P001	Maize	nucleus	31.98	26.52
CDX80448	Canola	nucleus	29.33	25.85
CDX88107	Canola	plastid	30.14	21.26
CDX87210	Canola	nucleus	20.57	20.16
CDY02151	Canola	nucleus	21.18	19.01
CDY64140	Canola	nucleus	21.18	18.15
CDY27522	Canola	nucleus	31.57	18.0

Protein Annotations

MapMan:27.1.4	Gene3D:3.40.50.2300	GO:A0A078H432	UniProt:A0A078H432	InterPro:CCT_domain	EnsemblPlants:CDY31578
ProteinID:CDY31578	ProteinID:CDY31578.1	InterPro:CheY-like_superfamily	GO:GO:0000160	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00047902001	InterPro:IPR001789	InterPro:IPR010402
PFAM:PF00072	PFAM:PF06203	PFscan:PS50110	PFscan:PS51017	PANTHER:PTHR43874	PANTHER:PTHR43874:SF34
SMART:SM00448	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	UniParc:UPI0004EE587D	SEG:seg	:

Description

BnaA10g12930DBnaA10g12930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H432]

Coordinates

chrLK032274:+:380569..383267

Molecular Weight (calculated)

53636.8 Da

IEP (calculated)

6.208

GRAVY (calculated)

-0.845

Length

491 amino acids

Sequence
(BLAST)

001: MCFNKNDITN EVVTERQAFG SSEEDDSRVE DTAGNANNLL QITQQQQPSA PVVNWERYLP VRSLKVLLVE NDDSTRHIVT ALLKNCSYEV TAVPDVLEAW
101: RVLEDENSCI DLVLTEVVMP VNSGTGLLSK IMSHKTLKNI PVIMMSSHDS MVLVFKCLSN GAVDFLVKPI RKNELKNLWQ HVWRRCHSSS GSGSESGIHN
201: KKSVKTESTD DEGSEDDASM SDEDHGNDDN GSNGLSNGEG GSDHGSGTQS SWTKRAGDIN STPPLYQVPH APNTSVGTCG NERECANKLK EAEDENVQIG
301: TGSHAGQRKS KKAVIALNRN NDDVLNGSSG NSQVETKTPS SNPEDLQALE PTLTKPKEAG DERASDRSVL RHSNHSAFSK YNNGATSANK APEENVGSCS
401: PQDSSVAKII GSSSSSDNPS NQQSSGSDRA AQREAALMKF RLKRKERCFE KKVRYHSRKK LAEQRPRIKG QFIRKMDDSK SGNECPSSDD S

Best Arabidopsis Sequence Match ( AT5G60100.5 )
(BLAST)

001: MCFNNIETGD EVETERQVFG SSEEDEFRVE DTARNTNNVQ ISQQQQQPLA HVVKWERYLP VRSLKVLLVE NDDSTRHIVT ALLKNCSYEV TAVPDVLEAW
101: RILEDEKSCI DLVLTEVDMP VHSGTGLLSK IMSHKTLKNI PVIMMSSHDS MVLVFKCLSN GAVDFLVKPI RKNELKNLWQ HVWRRCHSSS GSGSESGIHD
201: KKSVKPESTQ GSENDASISD EHRNESGSSG GLSNQDGGSD NGSGTQSSWT KRASDTKSTS PSNQFPDAPN KKGTYENGCA HVNRLKEAED QKEQIGTGSQ
301: TGMSMSKKAE EPGDLEKNAK YSVQALERNN DDTLNRSSGN SQVESKAPSS NREDLQSLEQ TLKKTREDRD YKVGDRSVLR HSNLSAFSKY NNGATSAKKA
401: PEENVESCSP HDSPIAKLLG SSSSSDNPLK QQSSGSDRWA QREAALMKFR LKRKERCFEK KVRYHSRKKL AEQRPHVKGQ FIRKRDDHKS GSEDN

Arabidopsis Description

PRR3Pseudo-response regulator 3 [Source:UniProtKB/TrEMBL;Acc:F4JXG7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.