CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX87210
CDY02151
CDY64140

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24470.1	CDX87210	AT5G61380.1	20407420
AT5G24470.1	CDY02151	AT5G61380.1	20407420
AT5G24470.1	CDY64140	AT5G61380.1	20407420

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009768.1-P	Field mustard	nucleus	96.41	95.38
CDY59590	Canola	nucleus	74.15	84.8
CDY05436	Canola	nucleus	75.94	83.76
CDY19831	Canola	nucleus	74.33	83.3
CDX87123	Canola	nucleus	75.76	82.75
AT5G24470.1	Thale cress	cytosol, nucleus, plastid	78.1	77.96
CDX88107	Canola	plastid	96.41	77.16
CDY41558	Canola	nucleus	30.16	40.78
VIT_16s0098g00900.t01	Wine grape	nucleus	47.94	38.81
CDY48015	Canola	nucleus	31.96	38.61
CDX80047	Canola	nucleus	27.29	38.29
Solyc03g081240.2.1	Tomato	nucleus	45.78	37.5
KRH64297	Soybean	nucleus	45.96	37.05
KRH53629	Soybean	nucleus	45.78	36.43
PGSC0003DMT400001574	Potato	nucleus	42.55	34.7
CDY09224	Canola	nucleus	7.9	34.38
CDX80201	Canola	nucleus	25.67	30.36
EER99234	Sorghum	nucleus	34.11	30.16
HORVU5Hr1G081620.4	Barley	nucleus	33.21	29.98
TraesCS5B01G320500.1	Wheat	nucleus	32.5	29.77
Os09t0532400-01	Rice	nucleus	33.21	29.7
TraesCS5A01G320300.1	Wheat	nucleus	32.32	29.65
Zm00001d006212_P002	Maize	nucleus	33.57	29.59
CDY31578	Canola	nucleus	25.85	29.33
GSMUA_Achr9P24280_001	Banana	nucleus	34.29	28.59
Zm00001d021291_P002	Maize	mitochondrion, plastid	33.57	27.54
GSMUA_Achr4P04970_001	Banana	nucleus	32.14	27.45
TraesCS5D01G326200.3	Wheat	nucleus	29.8	26.65
Zm00001d016258_P001	Maize	cytosol	8.98	24.15
GSMUA_Achr4P05170_001	Banana	nucleus	31.78	23.14
CDY10422	Canola	nucleus	28.73	22.82
CDX70344	Canola	nucleus	28.73	22.73
CDY55688	Canola	nucleus	28.01	22.64
CDX87210	Canola	nucleus	20.29	22.55
CDY04868	Canola	nucleus	27.83	22.37
CDY27522	Canola	nucleus	32.32	20.91
CDY02151	Canola	nucleus	20.29	20.66
CDY64140	Canola	nucleus	20.29	19.72

Protein Annotations

MapMan:27.1.4	Gene3D:3.40.50.2300	GO:A0A078CZA7	InterPro:CCT_domain	EnsemblPlants:CDX80448	ProteinID:CDX80448
ProteinID:CDX80448.1	InterPro:CheY-like_superfamily	GO:GO:0000160	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00133531001	InterPro:IPR001789
InterPro:IPR010402	PFAM:PF00072	PFAM:PF06203	PFscan:PS50110	PFscan:PS51017	PANTHER:PTHR43874
PANTHER:PTHR43874:SF4	SMART:SM00448	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	UniParc:UPI0004EF0F0C	SEG:seg

Description

BnaC07g29960DTwo-component response regulator-like APRR5 [Source:Projected from Arabidopsis thaliana (AT5G24470) UniProtKB/Swiss-Prot;Acc:Q6LA42]

Coordinates

chrLK031821:-:524906..527631

Molecular Weight (calculated)

62014.5 Da

IEP (calculated)

7.019

GRAVY (calculated)

-0.762

Length

557 amino acids

Sequence
(BLAST)

001: MGEVSDEVVE VTVVEKAPEA GGGKLTRRKT RRKDAAEGGD GLVTWERFLP KISLRVLLVE ADDSTRQIIS ALLRKCSYRV AAVPDGLKAW EMLRGKPESV
101: DLIVTEVDLP SISGYALLTL IMEHDLCKNI PVIMMSTQDS VNTVYKCMLK GAADYLVKPL RRNELRNLWQ HVWRRQSSLA PGSNFPVDES LGQQKPEGAS
201: ANNSTSNQVN EFQRDEHPVI GSGGGDDDQS SCSRPEMQGE SADVEDIPRV SSKEAIDFMG ASFRRNGQSH REESVAKYDT SRIELDLSLR RPDACENQPS
301: LHPSSASAFT RYVHRPLQTQ CSVSPLEQRK NVAASVDDNN TVLINQYNVS EPPPSAQRRN EASFYNSSDS PGPPFSNQMN SWPGQGSYPT PVPIIHFPGP
401: NTAHASAIAP ASVSPSPSSV SPHECSSMFH PFNGKPEGLQ ERDGSMDMEE RRHVSATEHS GTGNHCSTNY IDYHQQQQQL LEKRSEEGYS SSVGKLQQSL
501: QREAALNKFR MKRKERCFEK KVRYESRKKL AEQRPRIKGQ FVRQVQSTET STQEAPQ

Best Arabidopsis Sequence Match ( AT5G24470.1 )
(BLAST)

001: MTSSEEVVEV TVVKAPEAGG GKLSRRKIRK KDAGVDGLVK WERFLPKIAL RVLLVEADDS TRQIIAALLR KCSYRVAAVP DGLKAWEMLK GKPESVDLIL
101: TEVDLPSISG YALLTLIMEH DICKNIPVIM MSTQDSVNTV YKCMLKGAAD YLVKPLRRNE LRNLWQHVWR RQTSLAPDSF PWNESVGQQK AEGASANNSN
201: GKRDDHVVSG NGGDAQSSCT RPEMEGESAD VEVSARDAVQ MECAKSQFNE TRLLANELQS KQAEAIDFMG ASFRRTGRRN REESVAQYES RIELDLSLRR
301: PNASENQSSG DRPSLHPSSA SAFTRYVHRP LQTQCSASPV VTDQRKNVAA SQDDNIVLMN QYNTSEPPPN APRRNDTSFY TGADSPGPPF SNQLNSWPGQ
401: SSYPTPTPIN NIQFRDPNTA YTSAMAPASL SPSPSSVSPH EYSSMFHPFN SKPEGLQDRD CSMDVDERRY VSSATEHSAI GNHIDQLIEK KNEDGYSLSV
501: GKIQQSLQRE AALTKFRMKR KDRCYEKKVR YESRKKLAEQ RPRIKGQFVR QVQSTQAP

Arabidopsis Description

APRR5Two-component response regulator-like APRR5 [Source:UniProtKB/Swiss-Prot;Acc:Q6LA42]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.