CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 1
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX87210
CDY02151
CDY64140

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24470.1	CDX87210	AT5G61380.1	20407420
AT5G24470.1	CDY02151	AT5G61380.1	20407420
AT5G24470.1	CDY64140	AT5G61380.1	20407420

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009768.1-P	Field mustard	nucleus	80.32	99.29
CDX80448	Canola	nucleus	77.16	96.41
CDY59590	Canola	nucleus	59.77	85.42
CDY05436	Canola	nucleus	61.35	84.55
CDY19831	Canola	nucleus	59.91	83.9
CDX87123	Canola	nucleus	61.06	83.33
AT5G24470.1	Thale cress	cytosol, nucleus, plastid	63.07	78.67
CDY41558	Canola	nucleus	24.28	41.02
CDY48015	Canola	nucleus	25.72	38.83
VIT_16s0098g00900.t01	Wine grape	nucleus	38.36	38.81
CDX80047	Canola	nucleus	21.98	38.54
Solyc03g081240.2.1	Tomato	nucleus	36.93	37.79
KRH64297	Soybean	nucleus	36.93	37.19
KRH53629	Soybean	nucleus	36.93	36.71
PGSC0003DMT400001574	Potato	nucleus	34.34	34.99
CDY09224	Canola	nucleus	6.32	34.38
CDX80201	Canola	nucleus	21.12	31.21
EER99234	Sorghum	nucleus	27.73	30.63
HORVU5Hr1G081620.4	Barley	nucleus	27.16	30.63
CDY31578	Canola	nucleus	21.26	30.14
TraesCS5B01G320500.1	Wheat	nucleus	26.29	30.1
Os09t0532400-01	Rice	nucleus	26.87	30.02
Zm00001d006212_P002	Maize	nucleus	27.16	29.91
TraesCS5A01G320300.1	Wheat	nucleus	26.01	29.82
GSMUA_Achr9P24280_001	Banana	nucleus	28.02	29.19
Zm00001d021291_P002	Maize	mitochondrion, plastid	27.44	28.13
GSMUA_Achr4P04970_001	Banana	nucleus	26.15	27.91
TraesCS5D01G326200.3	Wheat	nucleus	23.85	26.65
Zm00001d016258_P001	Maize	cytosol	7.33	24.64
GSMUA_Achr4P05170_001	Banana	nucleus	26.58	24.18
CDY10422	Canola	nucleus	22.84	22.68
CDY55688	Canola	nucleus	22.41	22.64
CDX70344	Canola	nucleus	22.84	22.59
CDX87210	Canola	nucleus	16.24	22.55
CDY04868	Canola	nucleus	22.27	22.37
CDY27522	Canola	nucleus	26.01	21.02
CDY02151	Canola	nucleus	16.09	20.48
CDY64140	Canola	nucleus	16.09	19.55

Protein Annotations

MapMan:27.1.4	Gene3D:3.40.50.2300	GO:A0A078DGN5	InterPro:CCT_domain	EnsemblPlants:CDX88107	ProteinID:CDX88107
ProteinID:CDX88107.1	InterPro:CheY-like_superfamily	GO:GO:0000160	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00147540001	InterPro:IPR001789
InterPro:IPR010402	PFAM:PF00072	PFAM:PF06203	PFscan:PS50110	PFscan:PS51017	PANTHER:PTHR43874
PANTHER:PTHR43874:SF4	SMART:SM00448	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	TMHMM:TMhelix	UniParc:UPI0004EE140A
SEG:seg	:	:	:	:	:

Description

BnaA06g26980D

Coordinates

chrLK031854:-:650070..653994

Molecular Weight (calculated)

77636.9 Da

IEP (calculated)

7.803

GRAVY (calculated)

-0.475

Length

696 amino acids

Sequence
(BLAST)

001: MVVSDYHHTR VVFLSTKTTS FKQVSRSSVV WRIGLEDLFV SPTVFADVAT WPRQPTLLDI FQIFFTCIVT VGSGSVGLGI QISAVGTFAR LQDIFLFPLI
101: RFFLPLTISF VLKLFLLLLL VLELSSDLVF RKCCEMGEVS DEVVEVTVVE KAPEAGGGKL TRRKMRRKDA AEGGDGLVTW ERFLPKISLR VLLVEADDST
201: RQIISALLRK CSYRVAAVPD GLKAWEMLRG KPESVDLILT EVDLPSISGY ALLTLIMEHD TCKNIPVIMM STQDSVNTVY KCMLKGAADY LVKPLRRNEL
301: RNLWQHVWRR QSSLAPGSNF PVDESLGQQK PEGASANNST SNQVNGFQRE EHPVIGNGGG GDDQSSCSRP EMQGESADVV EDIPRVSSKE AIDFMGASFR
401: RNGQSHREES VAKHDTSRIE LDLSLRRPDT SENHQPSLHP SSASAFTRYV HRPLQTQCSV SPLVTDQRKN VAASGGDDNN TVLINQYNVS EPPPSAQRRN
501: EASFYNSSDS PGPPFSNQMN SWPGQGSYPT PAPIIHFPGP NHTSTMAPAS VSPSPSSVSP HEYSSMFHPF NGKPEGLQER DGSMDMEERR HVSSATEHSG
601: TGNHCSTNYI DYHHQQQQLL EKRSEEGYSS SVGKLQQSLQ REAALNKFRM KRKERCFEKK VRYESRKKLA EQRPRIKGQF VRQVQSTETS TQEAPQ

Best Arabidopsis Sequence Match ( AT5G24470.1 )
(BLAST)

001: MTSSEEVVEV TVVKAPEAGG GKLSRRKIRK KDAGVDGLVK WERFLPKIAL RVLLVEADDS TRQIIAALLR KCSYRVAAVP DGLKAWEMLK GKPESVDLIL
101: TEVDLPSISG YALLTLIMEH DICKNIPVIM MSTQDSVNTV YKCMLKGAAD YLVKPLRRNE LRNLWQHVWR RQTSLAPDSF PWNESVGQQK AEGASANNSN
201: GKRDDHVVSG NGGDAQSSCT RPEMEGESAD VEVSARDAVQ MECAKSQFNE TRLLANELQS KQAEAIDFMG ASFRRTGRRN REESVAQYES RIELDLSLRR
301: PNASENQSSG DRPSLHPSSA SAFTRYVHRP LQTQCSASPV VTDQRKNVAA SQDDNIVLMN QYNTSEPPPN APRRNDTSFY TGADSPGPPF SNQLNSWPGQ
401: SSYPTPTPIN NIQFRDPNTA YTSAMAPASL SPSPSSVSPH EYSSMFHPFN SKPEGLQDRD CSMDVDERRY VSSATEHSAI GNHIDQLIEK KNEDGYSLSV
501: GKIQQSLQRE AALTKFRMKR KDRCYEKKVR YESRKKLAEQ RPRIKGQFVR QVQSTQAP

Arabidopsis Description

APRR5Two-component response regulator-like APRR5 [Source:UniProtKB/Swiss-Prot;Acc:Q6LA42]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.