CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX87210
CDY02151
CDY64140

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24470.1	CDX87210	AT5G61380.1	20407420
AT5G24470.1	CDY02151	AT5G61380.1	20407420
AT5G24470.1	CDY64140	AT5G61380.1	20407420

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19831	Canola	nucleus	89.8	92.15
CDY59590	Canola	nucleus	75.29	78.85
CDY05436	Canola	nucleus	78.04	78.81
CDX80448	Canola	nucleus	82.75	75.76
AT5G24470.1	Thale cress	cytosol, nucleus, plastid	79.22	72.4
CDX88107	Canola	plastid	83.33	61.06
CDY41558	Canola	nucleus	32.16	39.81
CDY48015	Canola	nucleus	33.92	37.53
CDX80047	Canola	nucleus	29.02	37.28
VIT_16s0098g00900.t01	Wine grape	nucleus	48.63	36.05
Solyc03g081240.2.1	Tomato	nucleus	47.25	35.44
KRH64297	Soybean	nucleus	46.27	34.15
KRH53629	Soybean	nucleus	46.27	33.71
PGSC0003DMT400001574	Potato	nucleus	42.94	32.06
CDY09224	Canola	nucleus	7.65	30.47
CDX80201	Canola	nucleus	27.45	29.72
EER99234	Sorghum	nucleus	35.69	28.89
Zm00001d006212_P002	Maize	nucleus	35.1	28.32
CDY31578	Canola	nucleus	27.06	28.11
TraesCS5B01G320500.1	Wheat	nucleus	33.14	27.8
HORVU5Hr1G081620.4	Barley	nucleus	33.53	27.71
TraesCS5A01G320300.1	Wheat	nucleus	32.94	27.68
Os09t0532400-01	Rice	nucleus	33.73	27.61
GSMUA_Achr9P24280_001	Banana	nucleus	35.49	27.1
GSMUA_Achr4P04970_001	Banana	nucleus	34.12	26.69
Zm00001d021291_P002	Maize	mitochondrion, plastid	34.71	26.07
TraesCS5D01G326200.3	Wheat	nucleus	30.2	24.72
Zm00001d016258_P001	Maize	cytosol	9.02	22.22
GSMUA_Achr4P05170_001	Banana	nucleus	33.14	22.09
CDX70344	Canola	nucleus	30.2	21.88
CDY10422	Canola	nucleus	29.8	21.68
CDX87210	Canola	nucleus	21.18	21.56
CDY55688	Canola	nucleus	28.63	21.19
CDY04868	Canola	nucleus	28.43	20.92
CDY27522	Canola	nucleus	34.12	20.21
CDY02151	Canola	nucleus	20.78	19.38
CDY64140	Canola	nucleus	20.98	18.67

Protein Annotations

MapMan:27.1.4	Gene3D:3.40.50.2300	GO:A0A078DIM0	InterPro:CCT_domain	EnsemblPlants:CDX87123	ProteinID:CDX87123
ProteinID:CDX87123.1	InterPro:CheY-like_superfamily	GO:GO:0000160	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00146028001	InterPro:IPR001789
InterPro:IPR010402	PFAM:PF00072	PFAM:PF06203	PFscan:PS50110	PFscan:PS51017	PANTHER:PTHR43874
PANTHER:PTHR43874:SF4	SMART:SM00448	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	UniParc:UPI0004EEBCAB	SEG:seg

Description

BnaC09g04380D

Coordinates

chrLK031849:+:601929..605024

Molecular Weight (calculated)

56942.7 Da

IEP (calculated)

8.209

GRAVY (calculated)

-0.731

Length

510 amino acids

Sequence
(BLAST)

001: MSDEVVEVTV VEKAAEAVGG KSARRRVQRK DAAEGGDGLV KWERFLPKIA LRVLLVEADD STRQTISALL RKCSYRVAAV PDGLKAWEVL KGNPESVDLI
101: LTEVDLPSIS GYALLTLIME HDICKNIPII MMSTQDSVNT VYKCMLKGAA DYLVKPLRRN ELINLWQHVW RRRQSSLSPG SFPLDESVSH QKPEGAQVRF
201: SSQSSCTRPE MEGESADVED STKEAIDFIG ASFTRNGQDN REESVRIELD LSLRRPNQSS GDKPSLHPSS CSAFTRYVHK PLQTQCSVSP LVPNQRTNVA
301: GSEDDNIVVT NQYNSSEPPP SAPRRNEASF YNSADSPGPP SWPGQGSYPT RVPIKSIQFT SPNTTPASLS PSPSSISPHE YSSMFHPYNG NKPEGLQEQD
401: VEERRHVSSA TEHSTIGNHC TTSYIDYHHL HQQLVEKKNE EGYSSSVGKT QQSLREAALN KFRMKRKDRC FDKKVRYESR KKPAEQRPRI KGQFVRQVQS
501: TETSTQAAPQ

Best Arabidopsis Sequence Match ( AT5G24470.1 )
(BLAST)

001: MTSSEEVVEV TVVKAPEAGG GKLSRRKIRK KDAGVDGLVK WERFLPKIAL RVLLVEADDS TRQIIAALLR KCSYRVAAVP DGLKAWEMLK GKPESVDLIL
101: TEVDLPSISG YALLTLIMEH DICKNIPVIM MSTQDSVNTV YKCMLKGAAD YLVKPLRRNE LRNLWQHVWR RQTSLAPDSF PWNESVGQQK AEGASANNSN
201: GKRDDHVVSG NGGDAQSSCT RPEMEGESAD VEVSARDAVQ MECAKSQFNE TRLLANELQS KQAEAIDFMG ASFRRTGRRN REESVAQYES RIELDLSLRR
301: PNASENQSSG DRPSLHPSSA SAFTRYVHRP LQTQCSASPV VTDQRKNVAA SQDDNIVLMN QYNTSEPPPN APRRNDTSFY TGADSPGPPF SNQLNSWPGQ
401: SSYPTPTPIN NIQFRDPNTA YTSAMAPASL SPSPSSVSPH EYSSMFHPFN SKPEGLQDRD CSMDVDERRY VSSATEHSAI GNHIDQLIEK KNEDGYSLSV
501: GKIQQSLQRE AALTKFRMKR KDRCYEKKVR YESRKKLAEQ RPRIKGQFVR QVQSTQAP

Arabidopsis Description

APRR5Two-component response regulator-like APRR5 [Source:UniProtKB/Swiss-Prot;Acc:Q6LA42]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.