Factsheet for PGSC0003DMT400001574

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400050252
PGSC0003DMT400083086

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24470.1	PGSC0003DMT400050252	AT5G61380.1	20407420
AT5G24470.1	PGSC0003DMT400083086	AT5G61380.1	20407420

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g081240.2.1	Tomato	nucleus	90.48	90.88
VIT_16s0098g00900.t01	Wine grape	nucleus	46.27	45.93
CDY59590	Canola	nucleus	32.36	45.38
CDY05436	Canola	nucleus	33.09	44.75
Bra029407.1-P	Field mustard	nucleus	32.8	44.01
KRH64297	Soybean	nucleus	43.78	43.27
CDX87123	Canola	nucleus	32.06	42.94
AT5G24470.1	Thale cress	cytosol, nucleus, plastid	34.85	42.65
CDX80448	Canola	nucleus	34.7	42.55
Bra009768.1-P	Field mustard	nucleus	34.99	42.45
KRH53629	Soybean	nucleus	43.48	42.43
CDY19831	Canola	nucleus	30.45	41.85
Bra036517.1-P	Field mustard	nucleus	30.31	41.65
CDX88107	Canola	plastid	34.99	34.34
Zm00001d016258_P001	Maize	cytosol	10.1	33.33
EER99234	Sorghum	nucleus	30.45	33.02
TraesCS5A01G320300.1	Wheat	nucleus	28.99	32.62
TraesCS5B01G320500.1	Wheat	nucleus	28.99	32.57
Os09t0532400-01	Rice	nucleus	29.28	32.1
Zm00001d006212_P002	Maize	nucleus	29.43	31.8
HORVU5Hr1G081620.4	Barley	nucleus	28.7	31.77
TraesCS5D01G326200.3	Wheat	nucleus	28.7	31.46
PGSC0003DMT400029402	Potato	nucleus	28.55	30.47
Zm00001d021291_P002	Maize	mitochondrion, plastid	29.43	29.6
GSMUA_Achr4P04970_001	Banana	nucleus	27.09	28.37
GSMUA_Achr9P24280_001	Banana	nucleus	26.94	27.54
GSMUA_Achr4P05170_001	Banana	nucleus	26.79	23.92
PGSC0003DMT400083086	Potato	nucleus	16.98	21.13
PGSC0003DMT400050252	Potato	nucleus	16.4	20.33

Protein Annotations

EntrezGene:102589008	MapMan:27.1.4	Gene3D:3.40.50.12740	InterPro:CheY-like_superfamily	ncoils:Coil	GO:GO:0000160
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	InterPro:IPR001789	UniProt:M0ZIQ5	PFAM:PF00072	EnsemblPlantsGene:PGSC0003DMG400000584	PGSC:PGSC0003DMG400000584
EnsemblPlants:PGSC0003DMT400001574	PFscan:PS50110	PANTHER:PTHR43874	PANTHER:PTHR43874:SF4	SMART:SM00448	SUPFAM:SSF52172
InterPro:Sig_transdc_resp-reg_receiver	UniParc:UPI0002964A23	SEG:seg	:	:	:

Description

Pseudo-response regulator 5 [Source:PGSC_GENE;Acc:PGSC0003DMG400000584]

Coordinates

chr3:-:47435713..47440033

Molecular Weight (calculated)

75169.7 Da

IEP (calculated)

6.430

GRAVY (calculated)

-0.621

Length

683 amino acids

Sequence
(BLAST)

001: MGEVVVSSEG DLEVIGGGDM VIETEAGGNM KETGAGAAVA AASSSVLKWE RFLPKMVFRV LLVESDDSTR QIVAALLRKC SYRVAAVSDG LKAWELLKGR
101: PHNVDLILTE VDLPSISGYA FLSLIMEHDI CKNIPVIMMS SNDSVSTVYR CMLRGAADFL VKPVRKNELK NLWQHVWRRR AASGSSQGPV AESVAQQKVE
201: VTAENNACSN HSSGYKACVQ RNRECIEKGS DAQSSCTKPE LENEEENAEN LPESVQPNRD ASPPNAADLV KELLHEANNR LRISENDARA PITDANAMTT
301: GEDINSDDSW GHGRTIGQTS DEHPGPPTKQ AIDLIGAFDN YLKCNSKSSG SDTRINKGDS SPLLDLSLTR SHPSGSVNQF TNEKRRLNHS DASAFTRYVN
401: RAMQSGQSTS SRTYNLQEYE TDSDKQFCGH AIDYNSDTRG PITRPQSVAL PNYGEPGPAE MGLPSPQQRA TPLPIPVRGI RFEGPSSAYS SMIAPILRMP
501: SGISPLQSPG SATPQESSYQ ANPFLTLNCE SRSSQKLHSQ SDQNNSDSTA YNEGKRGHTS EPTTDCERFP SATDQTINSI CCNGDLNHVH LSYGSNGNIS
601: LPLGRTPAEY RKEESLHTPD GNSHQSQREA ALTKFRMKRK ERCFEKKVYV SSIIFLSKVR LYLTYHYLHL EIIWWQTHLE NSH

Best Arabidopsis Sequence Match ( AT5G24470.1 )
(BLAST)

001: MTSSEEVVEV TVVKAPEAGG GKLSRRKIRK KDAGVDGLVK WERFLPKIAL RVLLVEADDS TRQIIAALLR KCSYRVAAVP DGLKAWEMLK GKPESVDLIL
101: TEVDLPSISG YALLTLIMEH DICKNIPVIM MSTQDSVNTV YKCMLKGAAD YLVKPLRRNE LRNLWQHVWR RQTSLAPDSF PWNESVGQQK AEGASANNSN
201: GKRDDHVVSG NGGDAQSSCT RPEMEGESAD VEVSARDAVQ MECAKSQFNE TRLLANELQS KQAEAIDFMG ASFRRTGRRN REESVAQYES RIELDLSLRR
301: PNASENQSSG DRPSLHPSSA SAFTRYVHRP LQTQCSASPV VTDQRKNVAA SQDDNIVLMN QYNTSEPPPN APRRNDTSFY TGADSPGPPF SNQLNSWPGQ
401: SSYPTPTPIN NIQFRDPNTA YTSAMAPASL SPSPSSVSPH EYSSMFHPFN SKPEGLQDRD CSMDVDERRY VSSATEHSAI GNHIDQLIEK KNEDGYSLSV
501: GKIQQSLQRE AALTKFRMKR KDRCYEKKVR YESRKKLAEQ RPRIKGQFVR QVQSTQAP

Arabidopsis Description

APRR5Two-component response regulator-like APRR5 [Source:UniProtKB/Swiss-Prot;Acc:Q6LA42]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.