Factsheet for VIT_16s0098g00900.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_17s0000g06570.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24470.1	VIT_17s0000g06570.t01	AT5G61380.1	20407420

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64297	Soybean	nucleus	54.94	54.7
KRH53629	Soybean	nucleus	55.38	54.43
CDY59590	Canola	nucleus	36.34	51.33
Solyc03g081240.2.1	Tomato	nucleus	48.84	49.41
CDX87123	Canola	nucleus	36.05	48.63
Bra029407.1-P	Field mustard	nucleus	35.9	48.53
CDY05436	Canola	nucleus	35.47	48.32
CDY19831	Canola	nucleus	34.88	48.29
Bra036517.1-P	Field mustard	nucleus	34.74	48.09
CDX80448	Canola	nucleus	38.81	47.94
Bra009768.1-P	Field mustard	nucleus	38.81	47.42
AT5G24470.1	Thale cress	cytosol, nucleus, plastid	38.37	47.31
PGSC0003DMT400001574	Potato	nucleus	45.93	46.27
VIT_06s0004g03660.t01	Wine grape	nucleus	6.83	45.63
VIT_15s0048g02540.t01	Wine grape	nucleus	41.42	44.46
VIT_08s0040g03120.t01	Wine grape	nucleus	12.65	41.23
CDX88107	Canola	plastid	38.81	38.36
Os09t0532400-01	Rice	nucleus	33.72	37.24
EER99234	Sorghum	nucleus	33.14	36.19
TraesCS5B01G320500.1	Wheat	nucleus	31.4	35.53
TraesCS5A01G320300.1	Wheat	nucleus	31.25	35.42
Zm00001d006212_P002	Maize	nucleus	32.41	35.28
HORVU5Hr1G081620.4	Barley	nucleus	31.25	34.85
Zm00001d021291_P002	Maize	mitochondrion, plastid	32.85	33.28
GSMUA_Achr9P24280_001	Banana	nucleus	32.12	33.08
TraesCS5D01G326200.3	Wheat	nucleus	28.92	31.94
GSMUA_Achr4P04970_001	Banana	nucleus	30.09	31.75
Zm00001d016258_P001	Maize	cytosol	9.01	29.95
VIT_06s0004g03650.t01	Wine grape	nucleus	19.62	28.01
VIT_17s0000g06520.t01	Wine grape	cytosol	6.4	27.67
GSMUA_Achr4P05170_001	Banana	nucleus	29.65	26.67
VIT_13s0067g03390.t01	Wine grape	nucleus	28.78	25.75
VIT_17s0000g06570.t01	Wine grape	nucleus	18.6	23.23
VIT_17s0000g06560.t01	Wine grape	plastid	4.65	23.02

Protein Annotations

EntrezGene:100853219	wikigene:100853219	MapMan:27.1.4	Gene3D:3.40.50.2300	ProteinID:CCB48094	ProteinID:CCB48094.1
InterPro:CCT_domain	InterPro:CheY-like_superfamily	UniProt:F6H771	EMBL:FN595247	GO:GO:0000160	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	InterPro:IPR001789	InterPro:IPR010402
EntrezGene:LOC100853219	wikigene:LOC100853219	PFAM:PF00072	PFAM:PF06203	PFscan:PS50110	PFscan:PS51017
PANTHER:PTHR43874	PANTHER:PTHR43874:SF4	SMART:SM00448	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	UniParc:UPI0001984F93
ArrayExpress:VIT_16s0098g00900	EnsemblPlantsGene:VIT_16s0098g00900	EnsemblPlants:VIT_16s0098g00900.t01	unigene:Vvi.2987	RefSeq:XP_003634174	RefSeq:XP_003634174.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr16:-:21231507..21237793

Molecular Weight (calculated)

74719.4 Da

IEP (calculated)

7.549

GRAVY (calculated)

-0.602

Length

688 amino acids

Sequence
(BLAST)

001: MGEVVVSSEA GGGGMEGEVE KKEVGSGVVR WERFLPRMVL RVLLVEADDS TRQIIAALLR KCSYKVAAVP DGLKAWEVLK ARPHNIDLIL TEVELPSISG
101: FALLTLVMEH EICKNIPVIM MSSHGSINTV YKCMLRGAAD FLVKPVRRNE LKNLWQHVWR RQSSTVSGNG PQDESVAQQK VEATSENNPT SNHSSDHVAC
201: IQKNKEALNK VSDAQSSCSK PDLEAESAYM ETMQDFSNPT WSRSLVSDTK MQKNEECAKL GPKFLMHNKE AGGTLEAACR DVNTMTQPEA VEPENDGQGA
301: NAPSEACGNN AILGSSSREA IDLIGVFDNS KKCTYGNSSS NNGTKKSDSI PQLDLSLRRS HPSSPENQVA DERHTLNHSN GSAFSRYINR SLQPPHLPST
401: GVFNQQKNFG ADSDKRLSQL VTGYNSDITS PTLSTQRSVI SLATSPSGRV EIALCGPQQR AFPAPVPVRG VRFDGLCTGY SSVVPPIFSA QSGPSPMPSP
501: GSAGQHELSF RANPCHLSRH ETSDSQHLCN ALEQNANNST SQTNHKPEHK LDSLEGQGHF SPATDQNSSS SFGNGGASNL NSFGCGSICG SNGNANTVAV
601: VQAAAEGKNE EGIFSHEGHS QRSIQREAAL TKFRLKRKDR CFEKKVRYES RKKLAEQRPR VKGQFVRQVH TIPPPAEPDT YYGSSFDG

Best Arabidopsis Sequence Match ( AT5G24470.1 )
(BLAST)

001: MTSSEEVVEV TVVKAPEAGG GKLSRRKIRK KDAGVDGLVK WERFLPKIAL RVLLVEADDS TRQIIAALLR KCSYRVAAVP DGLKAWEMLK GKPESVDLIL
101: TEVDLPSISG YALLTLIMEH DICKNIPVIM MSTQDSVNTV YKCMLKGAAD YLVKPLRRNE LRNLWQHVWR RQTSLAPDSF PWNESVGQQK AEGASANNSN
201: GKRDDHVVSG NGGDAQSSCT RPEMEGESAD VEVSARDAVQ MECAKSQFNE TRLLANELQS KQAEAIDFMG ASFRRTGRRN REESVAQYES RIELDLSLRR
301: PNASENQSSG DRPSLHPSSA SAFTRYVHRP LQTQCSASPV VTDQRKNVAA SQDDNIVLMN QYNTSEPPPN APRRNDTSFY TGADSPGPPF SNQLNSWPGQ
401: SSYPTPTPIN NIQFRDPNTA YTSAMAPASL SPSPSSVSPH EYSSMFHPFN SKPEGLQDRD CSMDVDERRY VSSATEHSAI GNHIDQLIEK KNEDGYSLSV
501: GKIQQSLQRE AALTKFRMKR KDRCYEKKVR YESRKKLAEQ RPRIKGQFVR QVQSTQAP

Arabidopsis Description

APRR5Two-component response regulator-like APRR5 [Source:UniProtKB/Swiss-Prot;Acc:Q6LA42]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.