Factsheet for Bra009768.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012964.1-P
Bra035933.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24470.1	Bra012964.1-P	AT5G61380.1	20407420
AT5G24470.1	Bra035933.1-P	AT5G61380.1	20407420

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80448	Canola	nucleus	95.38	96.41
CDY59590	Canola	nucleus	73.71	85.22
Bra029407.1-P	Field mustard	nucleus	76.73	84.87
Bra036517.1-P	Field mustard	nucleus	74.07	83.9
CDX88107	Canola	plastid	99.29	80.32
AT5G24470.1	Thale cress	cytosol, nucleus, plastid	77.8	78.49
Bra004507.1-P	Field mustard	nucleus	30.02	41.02
VIT_16s0098g00900.t01	Wine grape	nucleus	47.42	38.81
Solyc03g081240.2.1	Tomato	nucleus	45.65	37.79
KRH64297	Soybean	nucleus	45.65	37.19
KRH53629	Soybean	nucleus	45.65	36.71
Bra020263.1-P	Field mustard	nucleus	7.82	35.77
PGSC0003DMT400001574	Potato	nucleus	42.45	34.99
EER99234	Sorghum	nucleus	34.28	30.63
HORVU5Hr1G081620.4	Barley	nucleus	33.57	30.63
Bra002512.1-P	Field mustard	nucleus	26.11	30.37
TraesCS5B01G320500.1	Wheat	nucleus	32.5	30.1
Os09t0532400-01	Rice	nucleus	33.21	30.02
Zm00001d006212_P002	Maize	nucleus	33.57	29.91
TraesCS5A01G320300.1	Wheat	nucleus	32.15	29.82
GSMUA_Achr9P24280_001	Banana	nucleus	34.64	29.19
Zm00001d021291_P002	Maize	mitochondrion, plastid	33.57	27.84
GSMUA_Achr4P04970_001	Banana	nucleus	32.15	27.76
TraesCS5D01G326200.3	Wheat	nucleus	29.48	26.65
Zm00001d016258_P001	Maize	cytosol	9.06	24.64
GSMUA_Achr4P05170_001	Banana	nucleus	32.15	23.66
Bra009565.1-P	Field mustard	nucleus	28.24	22.59
Bra035933.1-P	Field mustard	nucleus	19.89	22.0
Bra028861.1-P	Field mustard	nucleus	23.45	20.69
Bra012964.1-P	Field mustard	nucleus	20.25	19.79
Bra040484.1-P	Field mustard	cytosol	28.24	19.3

Protein Annotations

MapMan:27.1.4	Gene3D:3.40.50.2300	EnsemblPlantsGene:Bra009768	EnsemblPlants:Bra009768.1	EnsemblPlants:Bra009768.1-P	InterPro:CCT_domain
InterPro:CheY-like_superfamily	GO:GO:0000160	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	InterPro:IPR001789	InterPro:IPR010402	UniProt:M4CZX1	PFAM:PF00072	PFAM:PF06203
PFscan:PS50110	PFscan:PS51017	PANTHER:PTHR43874	PANTHER:PTHR43874:SF4	SMART:SM00448	SUPFAM:SSF52172
InterPro:Sig_transdc_resp-reg_receiver	UniParc:UPI000253F1F0	SEG:seg	:	:	:

Description

AT5G24470 (E=5e-213) APRR5, PRR5 | APRR5 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 5); transcription regulator/ two-component response regulator

Coordinates

chrA06:-:17106487..17108918

Molecular Weight (calculated)

62534.1 Da

IEP (calculated)

7.442

GRAVY (calculated)

-0.788

Length

563 amino acids

Sequence
(BLAST)

001: MGEVSDEVVE VTVVEKAPEA GGGKLTRRKM RRKDAAEGGD GLVTWERFLP KISLRVLLVE ADDSTRQIIS ALLRKCSYRV AAVPDGLKAW EMLRGKPESV
101: DLILTEVDLP SISGYALLTL IMEHDLCKNI PVIMMSTQDS VNTVYKCMLK GAADYLVKPL RRNELRNLWQ HVWRRQSSLA PGSNFPVDES LGQQKPEGAS
201: ANNSTSNQVN GFQREEQPVI GNGGGGGGDD QSSCSRPEMQ GESADVVEDI PRVSSKEAID FMGASFRRNG QSHREESVAK HDTSRIELDL SLRRPDTSEN
301: HQPSLHPSSA SAFTRYVHRP LQTQCSVSPL VTDQRKNVAA SGGDDNNTVL INQYNVSEPP PSAQRRNEAS FYNSSDSPGP PFSNQMNSWP GQGSYPTPAP
401: IIHFPGPNHT STMAPASVSP SPSSVSPHEY SSMFHPFNGK PEGLQERDGS MDMEERRHVS SATEHSGTGN HCSTNYIDYH HQQQQLLEKR SEEGYSSSVG
501: KLQQSLQREA ALNKFRMKRK ERCFEKKVRY ESRKKLAEQR PRIKGQFVRQ VQSTETSTQE APQ

Best Arabidopsis Sequence Match ( AT5G24470.1 )
(BLAST)

001: MTSSEEVVEV TVVKAPEAGG GKLSRRKIRK KDAGVDGLVK WERFLPKIAL RVLLVEADDS TRQIIAALLR KCSYRVAAVP DGLKAWEMLK GKPESVDLIL
101: TEVDLPSISG YALLTLIMEH DICKNIPVIM MSTQDSVNTV YKCMLKGAAD YLVKPLRRNE LRNLWQHVWR RQTSLAPDSF PWNESVGQQK AEGASANNSN
201: GKRDDHVVSG NGGDAQSSCT RPEMEGESAD VEVSARDAVQ MECAKSQFNE TRLLANELQS KQAEAIDFMG ASFRRTGRRN REESVAQYES RIELDLSLRR
301: PNASENQSSG DRPSLHPSSA SAFTRYVHRP LQTQCSASPV VTDQRKNVAA SQDDNIVLMN QYNTSEPPPN APRRNDTSFY TGADSPGPPF SNQLNSWPGQ
401: SSYPTPTPIN NIQFRDPNTA YTSAMAPASL SPSPSSVSPH EYSSMFHPFN SKPEGLQDRD CSMDVDERRY VSSATEHSAI GNHIDQLIEK KNEDGYSLSV
501: GKIQQSLQRE AALTKFRMKR KDRCYEKKVR YESRKKLAEQ RPRIKGQFVR QVQSTQAP

Arabidopsis Description

APRR5Two-component response regulator-like APRR5 [Source:UniProtKB/Swiss-Prot;Acc:Q6LA42]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.