Factsheet for Bra040484.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, vacuole
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, vacuole
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012964.1-P
Bra035933.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46790.1	Bra012964.1-P	AT5G61380.1	20407420
AT2G46790.1	Bra035933.1-P	AT5G61380.1	20407420

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48015	Canola	nucleus	52.31	93.49
AT2G46790.1	Thale cress	nucleus	39.81	70.09
Bra004507.1-P	Field mustard	nucleus	34.83	69.66
Bra036517.1-P	Field mustard	nucleus	18.45	30.58
Bra029407.1-P	Field mustard	nucleus	18.69	30.26
Bra009768.1-P	Field mustard	nucleus	19.3	28.24
Bra002512.1-P	Field mustard	nucleus	16.26	27.69
Bra020263.1-P	Field mustard	nucleus	3.76	25.2
TraesCS5A01G320300.1	Wheat	nucleus	17.48	23.72
TraesCS5B01G320500.1	Wheat	nucleus	17.48	23.68
HORVU5Hr1G081620.4	Barley	nucleus	17.72	23.66
Os09t0532400-01	Rice	nucleus	17.84	23.6
TraesCS5D01G326200.3	Wheat	nucleus	17.72	23.43
GSMUA_Achr9P24280_001	Banana	nucleus	18.33	22.6
EER99234	Sorghum	nucleus	17.23	22.54
GSMUA_Achr4P04970_001	Banana	nucleus	17.6	22.24
Zm00001d006212_P002	Maize	nucleus	16.99	22.15
Zm00001d021291_P002	Maize	mitochondrion, plastid	16.26	19.73
GSMUA_Achr4P05170_001	Banana	nucleus	17.84	19.22
Bra009565.1-P	Field mustard	nucleus	16.02	18.75
Zm00001d016258_P001	Maize	cytosol	4.49	17.87
Bra035933.1-P	Field mustard	nucleus	10.8	17.49
Bra028861.1-P	Field mustard	nucleus	13.35	17.24
Bra012964.1-P	Field mustard	nucleus	11.04	15.8

Protein Annotations

Gene3D:1.20.1510.10	MapMan:24.2.9.2.3	MapMan:27.1.4	Gene3D:3.40.50.2300	EnsemblPlantsGene:Bra040484	EnsemblPlants:Bra040484.1
EnsemblPlants:Bra040484.1-P	InterPro:Cation_efflux	InterPro:Cation_efflux_CTD_sf	InterPro:Cation_efflux_TMD_sf	InterPro:CheY-like_superfamily	GO:GO:0000160
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810
GO:GO:0006812	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008324	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	GO:GO:0098655	InterPro:IPR001789	InterPro:IPR027469
InterPro:IPR036837	UniProt:M4FHA6	PFAM:PF00072	PFAM:PF01545	PFscan:PS50110	PANTHER:PTHR11562
PANTHER:PTHR11562:SF80	SMART:SM00448	SUPFAM:SSF160240	SUPFAM:SSF161111	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver
TIGRFAMs:TIGR01297	TMHMM:TMhelix	UniParc:UPI0002544815	SEG:seg	:	:

Description

AT2G46790 (E=2e-152) APRR9, PRR9, TL1 | APRR9 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 9); protein binding / transcription regulator/ two-component response regulator

Coordinates

chrA04:+:18898099..18902803

Molecular Weight (calculated)

90811.5 Da

IEP (calculated)

6.258

GRAVY (calculated)

-0.226

Length

824 amino acids

Sequence
(BLAST)

001: MGEVVVLSSD EGTMETMMSR GKSSEVVRWE KYLPTTVLRV LLVESDDSTR QIITALLQKC SYKVVAVSDG LAAWEILKEK THNIDLILTE LDLPAISGFA
101: LLALVMEHEA CKHIPVIMMS SQDSMTMVLK CMLRGAADYL IKPMRKNELK NLWQHVWRRL TLRGDLTANG PSLPASQQNV EENDETCADS RYHSDHGSGS
201: QAISDNGEDK LMGDVKPLFE SFDVTMDLIG GIDKRSECYY GDNAREQHVG PELGLSLKRS CSERSLEKNQ DESKHQKISL SDASAFSRYE NGKAGEKAVV
301: VAVEASSSAE PKTPSESHEK LFRCDHGSAT TSSNHENIGS SSVSGHNQFL QSGTTKQKQE SLFPVESNRP KASKEVEVGC QSTNEGTVTA GGQSRSSSTR
401: EKAKEEEEEG EGGVTAQQRK SEREAALMKF RMKKKDRCFG KKMASSSPQH CHIIEVNRGK SAEESTTILA SKACGEAPCG FSDLNNASGD AQERNASMRK
501: LCIAVVLCLL FMTVEVFGGI KANSLAILTD AAHLLSDVAA FAISLFSLWA AGWEATPRQT YGFFRIEILG ALVSIQLIWL LTGILVYEAI IRLLSETSEV
601: NGFLMFLVAA FGLLVNIIMA VLLGHDHGHG HGHGHDHHSH GVTVTTHHHH HGHGEDKHHH HAHGDEDVTE QLLEKSEKRK RNINVQGAYL HVLGDSIQSV
701: GVMIGGGIIW YNPEWKIVDL ICTLVFSVIV LGTTINMIRS ILEVLMESTP REIDATKLEK GLLEMEEVVA VHELHIWAIT VGKVLLACHV NITPEADADM
801: VLNKVIDYIR REYNISHVTI QIER

Best Arabidopsis Sequence Match ( AT2G46790.1 )
(BLAST)

001: MGEIVVLSSD DGMETIKNRV KSSEVVQWEK YLPKTVLRVL LVESDYSTRQ IITALLRKCC YKVVAVSDGL AAWEVLKEKS HNIDLILTEL DLPSISGFAL
101: LALVMEHEAC KNIPVIMMSS QDSIKMVLKC MLRGAADYLI KPMRKNELKN LWQHVWRRLT LRDDPTAHAQ SLPASQHNLE DTDETCEDSR YHSDQGSGAQ
201: AINYNGHNKL MENGKSVDER DEFKETFDVT MDLIGGIDKR PDSIYKDKSR DECVGPELGL SLKRSCSVSF ENQDESKHQK LSLSDASAFS RFEESKSAEK
301: AVVALEESTS GEPKTPTESH EKLRKVTSDQ GSATTSSNQE NIGSSSVSFR NQVLQSTVTN QKQDSPIPVE SNREKAASKE VEAGSQSTNE GIAGQSSSTE
401: KPKEEESAKQ RWSRSQREAA LMKFRLKRKD RCFDKKVRYQ SRKKLAEQRP RVKGQFVRTV NSDASTKS

Arabidopsis Description

APRR9Two-component response regulator-like APRR9 [Source:UniProtKB/Swiss-Prot;Acc:Q8L500]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.