Factsheet for Bra035933.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000436.1-P
Bra004489.1-P
Bra005496.1-P
Bra009768.1-P
Bra010203.1-P
Bra013248.1-P
Bra021850.1-P
Bra022938.1-P
Bra029407.1-P
Bra036517.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61380.1	Bra010203.1-P	AT1G33470.1	21798944
AT5G61380.1	Bra005496.1-P	AT2G33410.1	21798944
AT5G61380.1	Bra021850.1-P	AT2G33410.1	21798944
AT5G61380.1	Bra022938.1-P	AT2G33410.1	21798944
AT5G61380.1	Bra000436.1-P	AT2G46970.1	11828029
AT5G61380.1	Bra004489.1-P	AT2G46970.1	11828029
AT5G61380.1	Bra013248.1-P	AT3G24650.1	10743655
AT5G61380.1	Bra009768.1-P	AT5G24470.1	20407420
AT5G61380.1	Bra029407.1-P	AT5G24470.1	20407420
AT5G61380.1	Bra036517.1-P	AT5G24470.1	20407420

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87210	Canola	nucleus	89.19	90.62
Bra012964.1-P	Field mustard	nucleus	84.68	74.83
AT5G61380.1	Thale cress	nucleus	87.23	71.84
KRH54582	Soybean	nucleus	57.56	52.51
KRH63298	Soybean	nucleus	57.56	52.32
KRH56889	Soybean	nucleus	58.35	51.65
VIT_17s0000g06570.t01	Wine grape	nucleus	55.6	51.36
KRH03510	Soybean	nucleus	57.76	50.78
Solyc03g115770.2.1	Tomato	nucleus	54.81	50.54
Solyc06g069690.2.1	Tomato	nucleus	49.51	50.2
PGSC0003DMT400050252	Potato	nucleus	54.22	50.09
PGSC0003DMT400083086	Potato	nucleus	53.05	49.18
GSMUA_Achr9P19550_001	Banana	nucleus	42.44	40.99
GSMUA_Achr2P04570_001	Banana	nucleus	43.22	40.07
GSMUA_Achr10P...	Banana	nucleus	41.85	39.3
TraesCS6B01G253900.1	Wheat	nucleus	39.49	38.95
Os02t0618200-01	Rice	nucleus	39.49	38.8
HORVU6Hr1G057630.1	Barley	nucleus	39.69	38.7
EES05438	Sorghum	nucleus	39.29	38.17
Zm00001d017241_P002	Maize	nucleus	38.7	38.1
Zm00001d051114_P001	Maize	nucleus	39.49	36.81
TraesCS6A01G227900.2	Wheat	endoplasmic reticulum, plasma membrane, plastid	39.69	35.94
TraesCS6D01G207100.2	Wheat	endoplasmic reticulum, nucleus, plastid	39.69	35.69
Zm00001d003811_P001	Maize	cytosol	21.02	33.23
Zm00001d018818_P001	Maize	cytosol	18.66	31.25
Zm00001d043140_P001	Maize	cytosol	18.66	31.25
Zm00001d044406_P001	Maize	cytosol	18.07	30.26
Bra020263.1-P	Field mustard	nucleus	6.68	27.64
Bra004507.1-P	Field mustard	nucleus	19.06	23.54
Bra036517.1-P	Field mustard	nucleus	21.61	22.13
Bra029407.1-P	Field mustard	nucleus	21.81	21.81
Bra002512.1-P	Field mustard	nucleus	20.24	21.28
Zm00001d005366_P001	Maize	cytosol	22.0	20.66
Bra009768.1-P	Field mustard	nucleus	22.0	19.89
Bra009565.1-P	Field mustard	nucleus	21.81	15.77
Bra028861.1-P	Field mustard	nucleus	17.88	14.26
Bra040484.1-P	Field mustard	cytosol	17.49	10.8

Protein Annotations

MapMan:27.1.3	Gene3D:3.40.50.2300	EnsemblPlantsGene:Bra035933	EnsemblPlants:Bra035933.1	EnsemblPlants:Bra035933.1-P	InterPro:CCT_domain
InterPro:CheY-like_superfamily	GO:GO:0000160	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	InterPro:IPR001789	InterPro:IPR010402	UniProt:M4F4D3	PFAM:PF00072	PFAM:PF06203
PFscan:PS50110	PFscan:PS51017	PANTHER:PTHR43874	PANTHER:PTHR43874:SF35	SMART:SM00448	SUPFAM:SSF52172
InterPro:Sig_transdc_resp-reg_receiver	UniParc:UPI0001C06382	SEG:seg	:	:	:

Description

AT5G61380 (E=2e-098) TOC1, APRR1, PRR1 | TOC1 (TIMING OF CAB EXPRESSION 1); transcription regulator/ two-component response regulator

Coordinates

chrA09:+:2852407..2854677

Molecular Weight (calculated)

57724.3 Da

IEP (calculated)

7.904

GRAVY (calculated)

-0.848

Length

509 amino acids

Sequence
(BLAST)

001: MDLNGECKGG DGFIDRSRVR ILLCDNDSKS LGDVFTLLSQ CSYQVTSVKS ARQVIDALNA EGPDIDIILA EIDLPMAKGM KMLRYITRDK DLRRIPVIMM
101: SRQDEVPVVV KCLKLGAADY LVKPLRTNEL LNLWTYMWRR RRMLGLAEKN MLSYDFDLVG SDPSDPNTNS TNLFSDDTDD RSIRSTNPLR GPLSRQEKEC
201: PAATGSVDGT ATSAPPPLNH LPGSHHEPNP EKFSSVPKKS RLKIGESSAF FTYVKSTALA TNCQDPPHVN GNGSLHLHPG VVAEKLQVVA SEVINKPKQT
301: HRSRETEKNL QNGGATEELH GRSYQERNQV AVNRSKDSSQ VAYPYYMQGV MNQVMMQSAA MMPQYGHHQH PHYPPNHLNG MTGVPYYHHH PMNTPLQHNQ
401: MSQNGQMSMV HYHPSSNEVR ASKLDRREEA LLKFRRKRNQ RCFDKKIRYV NRKKLAERRP RVKGQFVRKM NGVNVDLNGQ PDYDDEEEEE DEEEEENRDS
501: SPQDDAQGT

Best Arabidopsis Sequence Match ( AT5G61380.1 )
(BLAST)

001: MDLNGECKGG DGFIDRSRVR ILLCDNDSTS LGEVFTLLSE CSYQVTAVKS ARQVIDALNA EGPDIDIILA EIDLPMAKGM KMLRYITRDK DLRRIPVIMM
101: SRQDEVPVVV KCLKLGAADY LVKPLRTNEL LNLWTHMWRR RRMLGLAEKN MLSYDFDLVG SDQSDPNTNS TNLFSDDTDD RSLRSTNPQR GNLSHQENEW
201: SVATAPVHAR DGGLGADGTA TSSLAVTAIE PPLDHLAGSH HEPMKRNSNP AQFSSAPKKS RLKIGESSAF FTYVKSTVLR TNGQDPPLVD GNGSLHLHRG
301: LAEKFQVVAS EGINNTKQAR RATPKSTVLR TNGQDPPLVN GNGSHHLHRG AAEKFQVVAS EGINNTKQAH RSRGTEQYHS QGETLQNGAS YPHSLERSRT
401: LPTSMESHGR NYQEGNMNIP QVAMNRSKDS SQVDGSGFSA PNAYPYYMHG VMNQVMMQSA AMMPQYGHQI PHCQPNHPNG MTGYPYYHHP MNTSLQHSQM
501: SLQNGQMSMV HHSWSPAGNP PSNEVRVNKL DRREEALLKF RRKRNQRCFD KKIRYVNRKR LAERRPRVKG QFVRKMNGVN VDLNGQPDSA DYDDEEEEEE
601: EEEEENRDSS PQDDALGT

Arabidopsis Description

APRR1Two-component response regulator-like APRR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.