Factsheet for Bra022938.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra023895.1-P
Bra038436.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33410.1	Bra038436.1-P	AT1G31750.1	21798944
AT2G33410.1	Bra023895.1-P	AT3G21215.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84689	Canola	nucleus	99.02	99.02
CDX79527	Canola	nucleus	95.83	96.31
AT2G33410.1	Thale cress	nucleus	89.22	90.1
Bra021850.1-P	Field mustard	nucleus	80.15	89.1
Bra005496.1-P	Field mustard	nucleus	81.86	88.83
Bra010757.1-P	Field mustard	nucleus	56.13	59.95
VIT_05s0049g01660.t01	Wine grape	nucleus	66.42	58.41
KRH07772	Soybean	cytosol	13.73	57.14
KRG92276	Soybean	endoplasmic reticulum	63.48	54.41
KRH34534	Soybean	nucleus	62.75	54.35
Solyc09g090520.2.1	Tomato	nucleus	62.99	54.11
PGSC0003DMT400035000	Potato	nucleus	58.58	54.07
PGSC0003DMT400044195	Potato	nucleus	62.75	53.89
Solyc03g005680.2.1	Tomato	nucleus	56.37	53.86
TraesCS1B01G168200.1	Wheat	nucleus	55.39	50.0
KXG38359	Sorghum	nucleus	55.39	49.89
TraesCS1A01G150600.1	Wheat	nucleus	55.39	49.78
TraesCS1D01G147600.1	Wheat	nucleus	55.39	49.78
Zm00001d032739_P001	Maize	nucleus	53.19	48.98
Bra035441.1-P	Field mustard	mitochondrion, nucleus, plastid	9.31	48.72
GSMUA_Achr5P17690_001	Banana	nucleus	47.06	47.52
Zm00001d014058_P002	Maize	plastid	53.43	45.23
HORVU1Hr1G039790.1	Barley	nucleus	55.15	44.12
Bra017475.1-P	Field mustard	nucleus	36.27	34.66
Bra001267.1-P	Field mustard	nucleus	39.22	33.97
Bra028973.1-P	Field mustard	nucleus	36.03	33.95
Bra024928.1-P	Field mustard	nucleus	34.56	33.57
Bra040031.1-P	Field mustard	nucleus	39.95	33.54
Bra039380.1-P	Field mustard	nucleus	29.66	33.43
Bra026413.1-P	Field mustard	nucleus	33.82	32.62
Bra029681.1-P	Field mustard	nucleus	39.95	32.53
Bra019094.1-P	Field mustard	nucleus	36.52	32.18
Bra021062.1-P	Field mustard	nucleus	30.15	31.38
Bra022145.1-P	Field mustard	nucleus	34.31	30.43
Bra027860.1-P	Field mustard	cytosol, nucleus, peroxisome	25.74	28.85
Bra025568.1-P	Field mustard	nucleus	31.62	23.67
Bra017802.1-P	Field mustard	nucleus	23.53	23.53
Bra016445.1-P	Field mustard	nucleus	13.73	21.71
Bra012254.1-P	Field mustard	nucleus	12.5	21.16
Bra025852.1-P	Field mustard	nucleus	13.24	20.69
Bra024547.1-P	Field mustard	nucleus	12.01	20.5
Bra012350.1-P	Field mustard	nucleus	12.01	19.68
Bra039664.1-P	Field mustard	nucleus	19.12	18.8
Bra038113.1-P	Field mustard	nucleus	18.63	18.36
Bra010203.1-P	Field mustard	nucleus	12.99	17.38
Bra007096.1-P	Field mustard	nucleus	11.03	17.37
Bra004508.1-P	Field mustard	nucleus	13.24	17.31
Bra040485.1-P	Field mustard	nucleus	13.73	17.18
Bra003651.1-P	Field mustard	nucleus	11.03	16.61
Bra031230.1-P	Field mustard	nucleus	12.01	15.96
Bra015741.1-P	Field mustard	nucleus, plastid, vacuole	12.01	15.71
Bra029612.1-P	Field mustard	nucleus	10.78	15.33
Bra007277.1-P	Field mustard	nucleus	16.42	14.92
Bra031385.1-P	Field mustard	nucleus	10.54	14.83
Bra012321.1-P	Field mustard	nucleus	10.29	14.53
Bra016954.1-P	Field mustard	nucleus	14.95	13.86
Bra001228.1-P	Field mustard	cytosol	12.25	13.81
Bra014667.1-P	Field mustard	nucleus	10.05	13.44
Bra030265.1-P	Field mustard	nucleus	11.76	13.11

Protein Annotations

EnsemblPlants:Bra022938.1	EnsemblPlants:Bra022938.1-P	EnsemblPlantsGene:Bra022938	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR44291	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI000253FD2E	UniProt:M4E2D8	MapMan:35.1	:	:

Description

AT2G33410 (E=1e-127) | heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative

Coordinates

chrA03:+:7861232..7862735

Molecular Weight (calculated)

41514.4 Da

IEP (calculated)

6.521

GRAVY (calculated)

-0.583

Length

408 amino acids

Sequence
(BLAST)

001: MESDQGKLFI GGISWDTDEN LLKEYFANYG EVLQVTVMRE KATGRPRGFG FVAFSDPAVI DRVLQEKHHI DNRDVDVKRA MSREEQSPGG RPGGFNASRS
101: FDSGASVRTK KIFVGGLPPA LTSDEFRAYF ETYGPVSDAV IMIDQATQRP RGFGFVSFDS EDSVDLVLHK TFHDMNGKQV EVKRALPKDA NPGIAGGGRG
201: GSGGFPGYGG GSGGSCYEGG RVDSSSRYMP PQNVGSGYPP YGASGYGTGY GYGSNGVGYG GFGGYGNPAG APYGNPAGVP GAGFGSGPRS SWGGQAPTGY
301: SNVGYGNAAA PWVGGSGPGS AVMSQGGGAS AGYGSSQGYG YGGNDASYGA PSGYGAVGGR PGSMPNSHGG GYADGSDGSG GYGNLNHQGN GQAGYGGGYG
401: NVRQAQQQ

Best Arabidopsis Sequence Match ( AT2G33410.1 )
(BLAST)

001: MESDQGKLFI GGISWDTDEN LLREYFSNFG EVLQVTVMRE KATGRPRGFG FVAFSDPAVI DRVLQDKHHI DNRDVDVKRA MSREEQSPAG RSGTFNASRN
101: FDSGANVRTK KIFVGGLPPA LTSDEFRAYF ETYGPVSDAV IMIDQTTQRP RGFGFVSFDS EDSVDLVLHK TFHDLNGKQV EVKRALPKDA NPGIASGGGR
201: GSGGAGGFPG YGGSGGSGYE GRVDSNRYMQ PQNTGSGYPP YGGSGYGTGY GYGSNGVGYG GFGGYGNPAG APYGNPSVPG AGFGSGPRSS WGAQAPSGYG
301: NVGYGNAAPW GGSGGPGSAV MGQAGASAGY GSQGYGYGGN DSSYGTPSAY GAVGGRSGNM PNNHGGGGYA DALDGSGGYG NHQGNNGQAG YGGGYGSGRQ
401: AQQQ

Arabidopsis Description

Putative RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:O22791]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.