Factsheet for Bra024928.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17719	Canola	cytoskeleton, cytosol, nucleus	95.24	96.39
CDX77783	Canola	nucleus	94.52	93.41
Bra017475.1-P	Field mustard	nucleus	86.43	85.01
Bra022145.1-P	Field mustard	nucleus	87.14	79.57
AT5G47620.4	Thale cress	cytoskeleton, cytosol, nucleus	84.76	78.59
Bra021062.1-P	Field mustard	nucleus	58.33	62.5
GSMUA_Achr10P...	Banana	nucleus	47.38	45.23
Bra001267.1-P	Field mustard	nucleus	50.0	44.59
GSMUA_Achr10P...	Banana	nucleus	48.57	44.35
TraesCS4A01G150600.1	Wheat	nucleus	48.33	43.84
HORVU0Hr1G008280.1	Barley	nucleus	48.33	43.84
Os11t0637700-01	Rice	plasma membrane	48.57	43.68
TraesCS4D01G152200.1	Wheat	nucleus	48.1	43.63
Bra040031.1-P	Field mustard	nucleus	50.48	43.62
TraesCSU01G068500.1	Wheat	nucleus	47.86	43.41
Os07t0584500-01	Rice	nucleus	48.33	43.01
GSMUA_Achr6P10970_001	Banana	nucleus	50.95	42.8
GSMUA_Achr4P33100_001	Banana	nucleus	44.76	42.53
Bra028973.1-P	Field mustard	nucleus	43.81	42.49
TraesCS2B01G216600.2	Wheat	cytosol	47.14	42.04
Bra029681.1-P	Field mustard	nucleus	50.0	41.92
Zm00001d019079_P001	Maize	cytosol	44.52	41.74
TraesCS2D01G197500.2	Wheat	nucleus	46.67	41.7
Zm00001d007772_P001	Maize	nucleus	44.52	41.65
EER96020	Sorghum	nucleus	44.52	41.1
EER97452	Sorghum	nucleus	45.95	40.98
EER98147	Sorghum	nucleus	44.05	40.84
Bra035441.1-P	Field mustard	mitochondrion, nucleus, plastid	7.38	39.74
Zm00001d006704_P002	Maize	nucleus	45.48	39.46
Zm00001d019084_P002	Maize	nucleus	42.14	38.99
Bra019094.1-P	Field mustard	nucleus	42.14	38.23
Bra026413.1-P	Field mustard	nucleus	38.33	38.06
Bra010757.1-P	Field mustard	nucleus	33.57	36.91
TraesCS2A01G190400.1	Wheat	plastid	46.43	36.72
Bra021850.1-P	Field mustard	nucleus	31.43	35.97
Bra005496.1-P	Field mustard	nucleus	31.9	35.64
OQU83904	Sorghum	nucleus	38.1	35.56
Zm00001d021950_P007	Maize	endoplasmic reticulum, nucleus	45.71	35.49
Zm00001d019086_P001	Maize	nucleus	44.76	35.34
Bra022938.1-P	Field mustard	nucleus	33.57	34.56
GSMUA_Achr3P02300_001	Banana	nucleus	49.05	30.34
Bra039380.1-P	Field mustard	nucleus	25.71	29.83
Bra027860.1-P	Field mustard	cytosol, nucleus, peroxisome	25.71	29.67
Bra025568.1-P	Field mustard	nucleus	29.76	22.94
Bra017802.1-P	Field mustard	nucleus	21.43	22.06
Bra024547.1-P	Field mustard	nucleus	12.38	21.76
Bra012350.1-P	Field mustard	nucleus	12.62	21.29
Bra025852.1-P	Field mustard	nucleus	12.86	20.69
Bra012254.1-P	Field mustard	nucleus	11.67	20.33
Bra016445.1-P	Field mustard	nucleus	12.38	20.16
Bra003651.1-P	Field mustard	nucleus	11.9	18.45
Bra031385.1-P	Field mustard	nucleus	12.14	17.59
Bra007096.1-P	Field mustard	nucleus	10.71	17.37
Bra004508.1-P	Field mustard	nucleus	12.86	17.31
Bra010203.1-P	Field mustard	nucleus	12.38	17.05
Bra012321.1-P	Field mustard	nucleus	11.67	16.95
Bra040485.1-P	Field mustard	nucleus	13.1	16.87
Bra039664.1-P	Field mustard	nucleus	16.43	16.63
Bra038113.1-P	Field mustard	nucleus	16.19	16.43
Bra001228.1-P	Field mustard	cytosol	13.57	15.75
Bra015741.1-P	Field mustard	nucleus, plastid, vacuole	11.43	15.38
Bra031230.1-P	Field mustard	nucleus	10.95	14.98
Bra029612.1-P	Field mustard	nucleus	9.76	14.29
Bra007277.1-P	Field mustard	nucleus	14.76	13.81
Bra014667.1-P	Field mustard	nucleus	9.52	13.11
Bra016954.1-P	Field mustard	nucleus	13.1	12.5
Bra030265.1-P	Field mustard	nucleus	10.24	11.75

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EnsemblPlantsGene:Bra024928	EnsemblPlants:Bra024928.1	EnsemblPlants:Bra024928.1-P	InterPro:DAZAP1_RRM2
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
UniProt:M4E822	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44291	PANTHER:PTHR44291:SF3
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000253FA82	SEG:seg

Description

AT5G47620 (E=9e-185) | heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative

Coordinates

chrA06:+:24285401..24286841

Molecular Weight (calculated)

44900.5 Da

IEP (calculated)

9.227

GRAVY (calculated)

-0.400

Length

420 amino acids

Sequence
(BLAST)

001: MDMESGKLFI GGISWETTED RLREYFQSFG EVLEAVIMKD RATGRARGFG FLVFADPNVA ERVVLLRHVI DGKLVEAKKA VPRDDQKSNS SLQGSSPGPA
101: NSKKIFVGGL ASSVTEAEFK KYFSQFGTIT DVVVMYDHRT QRPRGFGFIS YESEDAVDRV LRRTFHELNG KMVEVKLAVP KDPIRNQMNV NGFGSGRISA
201: LLMNEYSQGF STSPVSSYGV KPEVRYSPGV VNRGGFSPFG HGYGIDLNFE QDQTQSYGSG SSAGFGRPFS PGYTPSLSRY SSQIETGGAN GSAAKNHLWG
301: NGGGLGYMSN SPISRSSFSG NSGMSSLGSI GDNWGGAGAR ARNSYRSEGG GLGLEAMRGV HVGGLSSGSN SLEADSLYSD SAWLSLPAKA DERLGMGAFD
401: FMSRGPAGYI NRQPNGGIAA

Best Arabidopsis Sequence Match ( AT5G47620.5 )
(BLAST)

001: MEMESCKLFI GGISWETSED RLRDYFHSFG EVLEAVIMKD RATGRARGFG FVVFADPNVA ERVVLLKHII DGKIVEAKKA VPRDDHVVFN KSNSSLQGSP
101: GPSNSKKIFV GGLASSVTEA EFKKYFAQFG MITDVVVMYD HRTQRPRGFG FISYDSEEAV DKVLQKTFHE LNGKMVEVKL AVPKDMALNT MRNQMNVNSF
201: GTSRISSLLN EYTQGFSPSP ISGYGVKPEV RYSPAVGNRG GFSPFGHGYG IELNFEPNQT QNYGSGSSGG FGRPFSPGYA ASLGRFGSQM ESGGASVGNG
301: SVLNAAPKNH LWGNGGLGYM SNSPISRSSF SGNSGMSSLG SIGDNWGTVA RARSSYHGER GGVGLEAMRG VHVGGYSSGS SILEADSLYS DSMWLSLPAK
401: AEEGLGMGPL DFMSRGPAGY INRQPNGGIA A

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JYK6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.