Factsheet for Bra012350.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25759	Canola	nucleus	99.6	99.6
Bra024547.1-P	Field mustard	nucleus	84.34	87.87
CDY67263	Canola	nucleus	97.19	73.78
KRH75298	Soybean	cytosol, nucleus	28.51	71.72
KRH13261	Soybean	cytosol	32.93	66.13
AT1G22910.3	Thale cress	nucleus	82.73	59.37
Solyc11g044470.1.1	Tomato	mitochondrion, nucleus, plastid	50.2	47.89
PGSC0003DMT400008944	Potato	nucleus	50.2	47.35
VIT_18s0089g00920.t01	Wine grape	nucleus	51.0	47.21
KRH40033	Soybean	nucleus	49.4	45.22
KRH23771	Soybean	nucleus	49.4	45.22
EES01849	Sorghum	nucleus	46.18	43.89
GSMUA_Achr8P08440_001	Banana	nucleus	43.37	41.7
GSMUA_Achr3P21850_001	Banana	nucleus	43.78	41.6
GSMUA_Achr6P17510_001	Banana	cytosol, mitochondrion, nucleus	44.98	41.48
GSMUA_Achr10P...	Banana	nucleus	44.98	41.33
Bra035441.1-P	Field mustard	mitochondrion, nucleus, plastid	12.85	41.03
KRH62942	Soybean	mitochondrion	33.33	40.69
Zm00001d042641_P001	Maize	nucleus	46.59	39.32
Os01t0876800-00	Rice	nucleus	46.59	38.67
TraesCS3D01G380100.1	Wheat	nucleus	45.78	38.51
TraesCS3B01G419200.1	Wheat	nucleus	44.98	37.84
TraesCS3A01G389600.1	Wheat	nucleus	44.98	37.71
Bra025852.1-P	Field mustard	nucleus	39.36	37.55
Bra016445.1-P	Field mustard	nucleus	38.55	37.21
Bra012254.1-P	Field mustard	nucleus	35.74	36.93
Bra010203.1-P	Field mustard	nucleus	42.57	34.75
TraesCS3B01G562300.3	Wheat	mitochondrion	42.57	33.97
TraesCS3A01G499100.1	Wheat	cytosol, nucleus, plastid	42.17	33.65
HORVU3Hr1G110370.1	Barley	cytosol, mitochondrion, nucleus	42.17	33.55
TraesCS3D01G505900.1	Wheat	mitochondrion	42.57	33.54
Zm00001d012238_P003	Maize	nucleus, plasma membrane, plastid	45.78	33.53
Os01t0958500-01	Rice	nucleus	40.56	32.58
EES02078	Sorghum	nucleus	41.77	30.77
Bra007096.1-P	Field mustard	nucleus	31.73	30.5
Zm00001d042042_P001	Maize	nucleus	40.56	29.71
Bra004508.1-P	Field mustard	nucleus	36.95	29.49
Bra040485.1-P	Field mustard	nucleus	36.95	28.22
Bra012321.1-P	Field mustard	nucleus	32.53	28.03
Bra003651.1-P	Field mustard	nucleus	30.12	27.68
Bra031385.1-P	Field mustard	nucleus	32.13	27.59
Bra015741.1-P	Field mustard	nucleus, plastid, vacuole	28.92	23.08
Bra029612.1-P	Field mustard	nucleus	20.88	18.12
GSMUA_Achr6P24180_001	Banana	cytosol	43.37	16.19
Bra031230.1-P	Field mustard	nucleus	18.07	14.66
Bra001228.1-P	Field mustard	cytosol	20.48	14.09
Bra038113.1-P	Field mustard	nucleus	22.09	13.29
Bra010757.1-P	Field mustard	nucleus	20.08	13.09
Bra021850.1-P	Field mustard	nucleus	19.28	13.08
Bra039664.1-P	Field mustard	nucleus	21.69	13.01
Bra005496.1-P	Field mustard	nucleus	19.28	12.77
Bra039380.1-P	Field mustard	nucleus	18.47	12.71
Bra024928.1-P	Field mustard	nucleus	21.29	12.62
Bra021062.1-P	Field mustard	nucleus	19.68	12.5
Bra017475.1-P	Field mustard	nucleus	21.29	12.41
Bra027860.1-P	Field mustard	cytosol, nucleus, peroxisome	17.67	12.09
Bra022938.1-P	Field mustard	nucleus	19.68	12.01
Bra007277.1-P	Field mustard	nucleus	19.68	10.91
Bra022145.1-P	Field mustard	nucleus	20.08	10.87
Bra001267.1-P	Field mustard	nucleus	20.48	10.83
Bra014667.1-P	Field mustard	nucleus	13.25	10.82
Bra016954.1-P	Field mustard	nucleus	18.88	10.68
Bra017802.1-P	Field mustard	nucleus	17.27	10.54
Bra028973.1-P	Field mustard	nucleus	18.07	10.39
Bra029681.1-P	Field mustard	nucleus	20.88	10.38
Bra040031.1-P	Field mustard	nucleus	20.08	10.29
Bra030265.1-P	Field mustard	nucleus	14.86	10.11
Bra019094.1-P	Field mustard	nucleus	18.07	9.72
Bra026413.1-P	Field mustard	nucleus	15.66	9.22
Bra025568.1-P	Field mustard	nucleus	19.68	8.99

Protein Annotations

EnsemblPlants:Bra012350.1	EnsemblPlants:Bra012350.1-P	EnsemblPlantsGene:Bra012350	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR44374	PANTHER:PTHR44374:SF1	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002541420	UniProt:M4D790	MapMan:35.1	:

Description

AT1G22910 (E=2e-095) | RNA recognition motif (RRM)-containing protein

Coordinates

chrA07:-:8300193..8302090

Molecular Weight (calculated)

26556.1 Da

IEP (calculated)

8.551

GRAVY (calculated)

-0.378

Length

249 amino acids

Sequence
(BLAST)

001: MTGGIGLGDT TYTKVFVGGL AWETHKDTLK KHFEQFGEIL EAVVITDKAS GRSKGYGFVT FKEADAASKA CVDATPVIDG RRANCNLASL GLQRSKPSTP
101: NHGGGRINNM RVMMNTMQTG FGPPHPPTTF SHYPQLPLNL FGYSPYSSDY SPFPTSLYGV YDCYSGGQYG LYSNGNGGSG GLTAAAASAA PFYPCGSGGG
201: HGGVQFTQPQ PFYHHFSSYN NPHQYSPATI SVQQGVTGFP LQPPLIPYR

Best Arabidopsis Sequence Match ( AT1G22910.1 )
(BLAST)

001: MAGGIGLGDT TYTKVFVGGL AWETHKETMK KHFEQFGEIL EAVVITDKAS GRSKGYGFVT FREAEAARSA CVDATPVIDG RRANCNLASL GLQRSKPSTP
101: NHGGGGRINN MRVMMSTMQT GFGPPPPPQP PTFTHYPHLP LNLFGYSPYS PDYSSFPTNL YGMYGCTSGG QYGVYGNRNS GGGGLTAAAA SATPFYPCGG
201: GHGGVQFSQP QPFYHHLSSY NPHHYSPPTF SMQQGVTGFP LQPPLIPYR

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I321]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.