Factsheet for TraesCS3D01G505900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G258200.1
TraesCS1B01G268700.1
TraesCS1D01G257500.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G33470.1	TraesCS1A01G258200.1	AT3G56680.1	21798944
AT1G33470.1	TraesCS1B01G268700.1	AT3G56680.1	21798944
AT1G33470.1	TraesCS1D01G257500.2	AT3G56680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G562300.3	Wheat	mitochondrion	94.3	95.51
HORVU3Hr1G110370.1	Barley	cytosol, mitochondrion, nucleus	93.35	94.25
TraesCS3A01G499100.1	Wheat	cytosol, nucleus, plastid	93.04	94.23
KRH75298	Soybean	cytosol, nucleus	21.84	69.7
Os01t0958500-01	Rice	nucleus	67.09	68.39
KRH13261	Soybean	cytosol	24.05	61.29
EES02078	Sorghum	nucleus	60.76	56.8
Zm00001d042042_P001	Maize	nucleus	59.18	55.0
KRH40033	Soybean	nucleus	40.82	47.43
VIT_18s0089g00920.t01	Wine grape	nucleus	39.87	46.84
KRH23771	Soybean	nucleus	40.19	46.69
PGSC0003DMT400008944	Potato	nucleus	38.61	46.21
Solyc11g044470.1.1	Tomato	mitochondrion, nucleus, plastid	37.66	45.59
Bra024547.1-P	Field mustard	nucleus	34.18	45.19
GSMUA_Achr3P21850_001	Banana	nucleus	37.34	45.04
GSMUA_Achr6P17510_001	Banana	cytosol, mitochondrion, nucleus	38.29	44.81
CDY04769	Canola	nucleus	33.54	44.73
CDY69197	Canola	nucleus	31.65	44.44
GSMUA_Achr10P...	Banana	nucleus	37.66	43.91
CDX73279	Canola	cytosol	33.23	43.39
AT1G33470.1	Thale cress	cytosol	33.54	43.27
GSMUA_Achr8P08440_001	Banana	nucleus	35.44	43.24
Bra012350.1-P	Field mustard	nucleus	33.54	42.57
CDY25759	Canola	nucleus	33.23	42.17
TraesCS3D01G380100.1	Wheat	nucleus	37.03	39.53
KRH62942	Soybean	mitochondrion	24.68	38.24
TraesCS4D01G225900.1	Wheat	nucleus	29.43	37.35
TraesCS7D01G392500.1	Wheat	cytosol, nucleus, plastid	32.91	36.24
Bra010203.1-P	Field mustard	nucleus	33.54	34.75
TraesCS6D01G258900.4	Wheat	plastid	31.33	34.38
CDY67263	Canola	nucleus	34.18	32.93
AT1G22910.3	Thale cress	nucleus	34.81	31.7
TraesCS4D01G198000.3	Wheat	cytosol	31.65	31.35
TraesCS7D01G180800.1	Wheat	nucleus	29.75	31.23
TraesCS6D01G297300.1	Wheat	plastid	26.9	27.24
CDY13339	Canola	mitochondrion	14.24	26.79
CDY21399	Canola	mitochondrion	11.39	24.83
GSMUA_Achr6P24180_001	Banana	cytosol	36.71	17.39
TraesCS6D01G272500.1	Wheat	nucleus	15.82	14.41
TraesCS6D01G173900.1	Wheat	nucleus	17.72	13.69
TraesCS3D01G232300.1	Wheat	nucleus	18.04	12.95
TraesCS1D01G237800.3	Wheat	cytosol	14.87	12.91
TraesCS3D01G480300.1	Wheat	cytosol	15.19	12.87
TraesCS7D01G281300.1	Wheat	nucleus	14.24	12.68
TraesCS7D01G362200.1	Wheat	nucleus	17.72	12.61
TraesCS4D01G152200.1	Wheat	nucleus	18.35	12.53
TraesCS1D01G147600.1	Wheat	nucleus	17.09	11.89
TraesCS2D01G256500.1	Wheat	nucleus	13.92	11.76
TraesCS2D01G197500.2	Wheat	nucleus	17.09	11.49
TraesCS2D01G529100.1	Wheat	nucleus	16.77	10.41
TraesCS5D01G415400.1	Wheat	nucleus	9.81	8.96
TraesCS3D01G186500.1	Wheat	nucleus	13.29	8.75

Protein Annotations

EnsemblPlants:TraesCS3D01G505900.1	EnsemblPlantsGene:TraesCS3D01G505900	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom	PANTHER:PTHR44374
PANTHER:PTHR44374:SF2	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360	SUPFAM:SSF54928
TIGR:cd12384	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr3D:+:593112030..593118351

Molecular Weight (calculated)

33108.2 Da

IEP (calculated)

8.354

GRAVY (calculated)

-0.144

Length

316 amino acids

Sequence
(BLAST)

001: MSMAHQAAAG GGDTRLTKVF VGGLAWETSK EGVRGHFERF GEILEAVVIA DKGTGRSKGY GFVTFREAEA AMRACLDPYP VIDGRRANCN LACLGVQRSK
101: APQPLSYLQP YAAVGHVHGG GNINTRAMKA AIAATGGGAT ASFVDHGIQQ GIPAAAYNMY GYSPYFSDYS YQPLTYYQAY GGLAGGAQYQ VFNGGATTAP
201: TAGLAMADPN GLYPYYQYAP AVSAAAAYNM MQYPQMYQYA AVGAPPESSP TAVSGLHQFI GATAFEPSTG GQAGGMTLAQ LTAPALPASA PQYPQYQYRL
301: VSPMPIATPD QKKPLA

Best Arabidopsis Sequence Match ( AT1G22910.1 )
(BLAST)

001: MAGGIGLGDT TYTKVFVGGL AWETHKETMK KHFEQFGEIL EAVVITDKAS GRSKGYGFVT FREAEAARSA CVDATPVIDG RRANCNLASL GLQRSKPSTP
101: NHGGGGRINN MRVMMSTMQT GFGPPPPPQP PTFTHYPHLP LNLFGYSPYS PDYSSFPTNL YGMYGCTSGG QYGVYGNRNS GGGGLTAAAA SATPFYPCGG
201: GHGGVQFSQP QPFYHHLSSY NPHHYSPPTF SMQQGVTGFP LQPPLIPYR

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I321]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.