Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04769 | Canola | nucleus | 96.89 | 91.98 |
| Bra024547.1-P | Field mustard | nucleus | 97.33 | 91.63 |
| CDY21399 | Canola | mitochondrion | 55.11 | 85.52 |
| CDY25759 | Canola | nucleus | 86.67 | 78.31 |
| KRH75298 | Soybean | cytosol, nucleus | 32.44 | 73.74 |
| KRH13261 | Soybean | cytosol | 36.89 | 66.94 |
| CDY67263 | Canola | nucleus | 86.22 | 59.15 |
| AT1G22910.3 | Thale cress | nucleus | 86.22 | 55.91 |
| Solyc11g044470.1.1 | Tomato | mitochondrion, nucleus, plastid | 55.11 | 47.51 |
| VIT_18s0089g00920.t01 | Wine grape | nucleus | 56.44 | 47.21 |
| PGSC0003DMT400008944 | Potato | nucleus | 55.11 | 46.97 |
| KRH23771 | Soybean | nucleus | 55.56 | 45.96 |
| KRH40033 | Soybean | nucleus | 55.56 | 45.96 |
| CDY51790 | Canola | cytosol | 20.89 | 43.93 |
| EES01849 | Sorghum | nucleus | 51.11 | 43.89 |
| GSMUA_Achr6P17510_001 | Banana | cytosol, mitochondrion, nucleus | 50.67 | 42.22 |
| GSMUA_Achr8P08440_001 | Banana | nucleus | 48.44 | 42.08 |
| GSMUA_Achr10P... | Banana | nucleus | 50.67 | 42.07 |
| GSMUA_Achr3P21850_001 | Banana | nucleus | 48.89 | 41.98 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 20.89 | 41.96 |
| CDX73279 | Canola | cytosol | 44.0 | 40.91 |
| KRH62942 | Soybean | mitochondrion | 36.89 | 40.69 |
| Zm00001d042641_P001 | Maize | nucleus | 51.11 | 38.98 |
| Os01t0876800-00 | Rice | nucleus | 51.11 | 38.33 |
| TraesCS3B01G419200.1 | Wheat | nucleus | 50.22 | 38.18 |
| TraesCS3D01G380100.1 | Wheat | nucleus | 50.22 | 38.18 |
| TraesCS3A01G389600.1 | Wheat | nucleus | 50.22 | 38.05 |
| CDY31859 | Canola | nucleus | 40.44 | 37.76 |
| CDY31508 | Canola | nucleus | 41.33 | 37.2 |
| CDY33653 | Canola | nucleus | 41.33 | 36.76 |
| CDY01349 | Canola | nucleus | 39.11 | 36.51 |
| CDY29496 | Canola | nucleus | 41.33 | 35.63 |
| CDX96615 | Canola | nucleus | 39.56 | 35.32 |
| Zm00001d012238_P003 | Maize | nucleus, plasma membrane, plastid | 50.22 | 33.24 |
| CDX88283 | Canola | nucleus | 41.33 | 33.21 |
| CDY02889 | Canola | nucleus | 32.0 | 33.18 |
| CDY41556 | Canola | nucleus | 42.22 | 32.76 |
| TraesCS3A01G499100.1 | Wheat | cytosol, nucleus, plastid | 44.44 | 32.05 |
| TraesCS3B01G562300.3 | Wheat | mitochondrion | 44.44 | 32.05 |
| TraesCS3D01G505900.1 | Wheat | mitochondrion | 44.44 | 31.65 |
| HORVU3Hr1G110370.1 | Barley | cytosol, mitochondrion, nucleus | 44.0 | 31.63 |
| CDX73451 | Canola | cytosol | 35.11 | 31.6 |
| CDX78261 | Canola | nucleus | 35.11 | 30.5 |
| CDY64698 | Canola | nucleus | 35.11 | 30.27 |
| CDX80046 | Canola | nucleus | 42.22 | 30.06 |
| CDX87594 | Canola | nucleus | 42.67 | 30.0 |
| Os01t0958500-01 | Rice | nucleus | 40.89 | 29.68 |
| CDY41557 | Canola | nucleus | 41.33 | 29.43 |
| CDY48016 | Canola | nucleus | 42.22 | 29.14 |
| CDY27523 | Canola | nucleus | 41.78 | 29.1 |
| CDX87460 | Canola | nucleus | 36.0 | 28.42 |
| EES02078 | Sorghum | nucleus | 42.67 | 28.4 |
| CDX88432 | Canola | nucleus | 35.11 | 27.82 |
| Zm00001d042042_P001 | Maize | nucleus | 41.78 | 27.65 |
| CDX79253 | Canola | nucleus | 33.78 | 27.14 |
| CDY46642 | Canola | nucleus | 34.67 | 26.99 |
| CDY21356 | Canola | nucleus | 34.67 | 26.9 |
| CDX68024 | Canola | nucleus | 33.33 | 26.5 |
| CDY00446 | Canola | nucleus | 35.11 | 23.24 |
| CDY13339 | Canola | mitochondrion | 16.0 | 21.43 |
| GSMUA_Achr6P24180_001 | Banana | cytosol | 46.67 | 15.74 |
| CDY05301 | Canola | nucleus | 24.0 | 15.38 |
| CDY24657 | Canola | nucleus | 23.11 | 15.29 |
| CDY13782 | Canola | nucleus | 19.56 | 14.33 |
| CDX76950 | Canola | nucleus | 19.56 | 14.29 |
| CDX74070 | Canola | cytosol | 22.22 | 13.89 |
| CDY37724 | Canola | nucleus | 19.56 | 13.62 |
| CDY08023 | Canola | nucleus | 21.78 | 13.61 |
| CDY12068 | Canola | nucleus | 20.89 | 13.13 |
| CDY26229 | Canola | nucleus | 21.33 | 12.94 |
| CDY48318 | Canola | nucleus | 21.33 | 12.9 |
| CDY67299 | Canola | nucleus | 21.33 | 12.6 |
| CDX90262 | Canola | nucleus | 21.33 | 12.57 |
| CDY17173 | Canola | nucleus | 20.89 | 12.47 |
| CDY23739 | Canola | nucleus | 20.89 | 12.27 |
| CDY25867 | Canola | nucleus | 21.78 | 12.1 |
| CDY41059 | Canola | nucleus | 22.67 | 11.94 |
| CDY24201 | Canola | nucleus | 19.11 | 11.88 |
| CDY43360 | Canola | nucleus | 19.11 | 11.88 |
| CDX79527 | Canola | nucleus | 21.33 | 11.82 |
| CDY26001 | Canola | nucleus | 21.33 | 11.79 |
| CDY50131 | Canola | nucleus | 20.0 | 11.78 |
| CDY55846 | Canola | nucleus | 20.89 | 11.72 |
| CDY24106 | Canola | nucleus | 21.33 | 11.62 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 21.33 | 11.57 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 17.78 | 11.56 |
| CDX84689 | Canola | nucleus | 20.89 | 11.52 |
| CDY06947 | Canola | nucleus | 21.78 | 11.4 |
| CDY42724 | Canola | cytosol | 19.11 | 11.35 |
| CDX77783 | Canola | nucleus | 21.33 | 11.29 |
| CDY69852 | Canola | cytosol | 19.11 | 11.26 |
| CDY57580 | Canola | nucleus | 21.78 | 11.06 |
| CDY46690 | Canola | nucleus | 20.89 | 10.98 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 20.0 | 10.95 |
| CDY07975 | Canola | nucleus | 22.67 | 10.83 |
| CDY36753 | Canola | nucleus | 20.89 | 10.8 |
| CDY27186 | Canola | nucleus | 21.33 | 10.69 |
| CDX74030 | Canola | nucleus | 22.22 | 10.59 |
| CDX72106 | Canola | nucleus | 21.33 | 10.55 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 16.89 | 10.47 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 16.89 | 10.44 |
| CDY11989 | Canola | nucleus | 20.0 | 10.42 |
| CDY22136 | Canola | nucleus | 22.22 | 10.29 |
| CDY15850 | Canola | nucleus | 16.89 | 10.27 |
| CDX94301 | Canola | nucleus | 20.0 | 10.18 |
| CDX76015 | Canola | nucleus | 13.78 | 10.16 |
| CDY46689 | Canola | nucleus | 20.89 | 10.15 |
| CDY35966 | Canola | nucleus | 21.78 | 9.92 |
| CDY28918 | Canola | mitochondrion | 21.33 | 9.92 |
| CDX75170 | Canola | extracellular | 7.11 | 9.82 |
| CDY66272 | Canola | nucleus | 21.33 | 9.82 |
| CDX69279 | Canola | nucleus | 10.22 | 9.75 |
| CDX89316 | Canola | endoplasmic reticulum | 19.11 | 9.62 |
| CDX92807 | Canola | nucleus | 19.11 | 9.56 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 15.11 | 9.37 |
| CDY25957 | Canola | nucleus | 21.78 | 8.86 |
| CDY36357 | Canola | nucleus | 20.89 | 8.67 |
| CDY42577 | Canola | nucleus | 20.44 | 8.44 |
| CDY47382 | Canola | golgi, plastid | 14.22 | 7.69 |
| CDY40554 | Canola | nucleus | 21.33 | 7.32 |
| CDX69277 | Canola | mitochondrion | 5.33 | 6.45 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078JUM2 | UniProt:A0A078JUM2 | EnsemblPlants:CDY69197 | ProteinID:CDY69197 |
| ProteinID:CDY69197.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00083894001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44374 |
| PANTHER:PTHR44374:SF1 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EE6878 |
| SEG:seg | : | : | : | : | : |
Description
BnaAnng29640DBnaAnng29640D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JUM2]
Coordinates
chrLK038836:+:2747..4429
Molecular Weight (calculated)
24115.3 Da
IEP (calculated)
8.571
GRAVY (calculated)
-0.362
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MADTTYTKVF VGGLAWETDK DTMKKHFEQF GEILEAVVIT DKASGRSKGY GFVTFKEAEA ARRACVDGTP VIDGRRANCN LASLGLQRSK PSTPNHGGGR
101: INNMRVMMSS TMQTGFGPPP TFTHYPHLPL NLFGYTLPSS YFSPFPTNLY GVYGCNSAGQ YGLYGNGNGV SGGLTAAAAS AAPFYPCGGG QGGVQFSQPQ
201: PFYHHFSAYD NPHHYSPATI SLQQG
101: INNMRVMMSS TMQTGFGPPP TFTHYPHLPL NLFGYTLPSS YFSPFPTNLY GVYGCNSAGQ YGLYGNGNGV SGGLTAAAAS AAPFYPCGGG QGGVQFSQPQ
201: PFYHHFSAYD NPHHYSPATI SLQQG
001: MAGGIGLGDT TYTKVFVGGL AWETHKETMK KHFEQFGEIL EAVVITDKAS GRSKGYGFVT FREAEAARSA CVDATPVIDG RRANCNLASL GLQRSKPSTP
101: NHGGGGRINN MRVMMSTMQT GFGPPPPPQP PTFTHYPHLP LNLFGYSPYS PDYSSFPTNL YGMYGCTSGG QYGVYGNRNS GGGGLTAAAA SATPFYPCGG
201: GHGGVQFSQP QPFYHHLSSY NPHHYSPPTF SMQQGSRNRL SASTTSYSLP LKKLRVFGSY QASYHHLLLL RSRAILWFKG CSWLISALSF SPSALKATPF
301: YGIWRWLFKQ IPMGSPVSDG DHVVFVISHL LAIASSRENG FLFERYC
101: NHGGGGRINN MRVMMSTMQT GFGPPPPPQP PTFTHYPHLP LNLFGYSPYS PDYSSFPTNL YGMYGCTSGG QYGVYGNRNS GGGGLTAAAA SATPFYPCGG
201: GHGGVQFSQP QPFYHHLSSY NPHHYSPPTF SMQQGSRNRL SASTTSYSLP LKKLRVFGSY QASYHHLLLL RSRAILWFKG CSWLISALSF SPSALKATPF
301: YGIWRWLFKQ IPMGSPVSDG DHVVFVISHL LAIASSRENG FLFERYC
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I321]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.