Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24106 | Canola | nucleus | 96.31 | 94.92 |
| CDY55846 | Canola | nucleus | 84.77 | 86.03 |
| CDY25867 | Canola | nucleus | 83.29 | 83.7 |
| AT3G15010.2 | Thale cress | nucleus | 74.45 | 75.0 |
| GSMUA_Achr5P09550_001 | Banana | nucleus | 56.27 | 61.56 |
| VIT_19s0014g01570.t01 | Wine grape | nucleus | 67.32 | 61.02 |
| KRH26210 | Soybean | nucleus | 64.13 | 59.73 |
| KRH55109 | Soybean | nucleus | 64.13 | 58.78 |
| GSMUA_Achr5P09540_001 | Banana | nucleus | 52.58 | 55.15 |
| PGSC0003DMT400039802 | Potato | nucleus | 56.27 | 51.35 |
| Solyc12g014210.1.1 | Tomato | nucleus | 38.57 | 46.87 |
| HORVU3Hr1G053990.1 | Barley | nucleus | 50.61 | 46.71 |
| Os01t0614500-01 | Rice | nucleus | 51.11 | 46.53 |
| TraesCS3A01G220400.1 | Wheat | nucleus | 50.12 | 46.36 |
| TraesCS3B01G250700.1 | Wheat | golgi | 50.12 | 46.36 |
| TraesCS3D01G232300.1 | Wheat | nucleus | 49.88 | 46.14 |
| EES03272 | Sorghum | nucleus | 49.88 | 45.62 |
| Zm00001d011336_P002 | Maize | nucleus | 49.88 | 45.31 |
| Zm00001d044469_P003 | Maize | nucleus | 49.39 | 44.97 |
| PGSC0003DMT400032256 | Potato | nucleus | 26.54 | 34.62 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 9.34 | 33.93 |
| CDY51790 | Canola | cytosol | 8.85 | 33.64 |
| PGSC0003DMT400031324 | Potato | cytosol | 11.06 | 32.37 |
| CDX76015 | Canola | nucleus | 23.1 | 30.82 |
| CDY27186 | Canola | nucleus | 33.42 | 30.29 |
| CDY57580 | Canola | nucleus | 32.92 | 30.25 |
| CDY06947 | Canola | nucleus | 31.94 | 30.23 |
| CDX72106 | Canola | nucleus | 33.66 | 30.11 |
| CDY33653 | Canola | nucleus | 17.69 | 28.46 |
| PGSC0003DMT400031418 | Potato | extracellular, golgi | 25.31 | 28.3 |
| CDY31859 | Canola | nucleus | 16.22 | 27.39 |
| CDX96615 | Canola | nucleus | 16.95 | 27.38 |
| CDX76950 | Canola | nucleus | 20.64 | 27.27 |
| CDY31508 | Canola | nucleus | 16.71 | 27.2 |
| CDY13782 | Canola | nucleus | 20.39 | 27.04 |
| CDY29496 | Canola | nucleus | 16.95 | 26.44 |
| CDY01349 | Canola | nucleus | 15.48 | 26.14 |
| CDX73279 | Canola | cytosol | 14.99 | 25.21 |
| CDX88283 | Canola | nucleus | 16.71 | 24.29 |
| CDY02889 | Canola | nucleus | 12.04 | 22.58 |
| CDX88432 | Canola | nucleus | 15.48 | 22.18 |
| CDX87460 | Canola | nucleus | 15.48 | 22.11 |
| CDY48318 | Canola | nucleus | 20.15 | 22.04 |
| CDY47382 | Canola | golgi, plastid | 22.36 | 21.88 |
| CDY64698 | Canola | nucleus | 14.0 | 21.84 |
| CDY26229 | Canola | nucleus | 19.9 | 21.83 |
| CDY21356 | Canola | nucleus | 15.48 | 21.72 |
| CDX78261 | Canola | nucleus | 13.76 | 21.62 |
| CDX73451 | Canola | cytosol | 13.27 | 21.6 |
| CDX79253 | Canola | nucleus | 14.74 | 21.43 |
| CDY69197 | Canola | nucleus | 11.79 | 21.33 |
| CDX87594 | Canola | nucleus | 16.71 | 21.25 |
| CDY04769 | Canola | nucleus | 12.29 | 21.1 |
| CDY17173 | Canola | nucleus | 19.41 | 20.95 |
| CDY25759 | Canola | nucleus | 12.78 | 20.88 |
| CDX75170 | Canola | extracellular | 8.35 | 20.86 |
| CDY46642 | Canola | nucleus | 14.74 | 20.76 |
| CDY24201 | Canola | nucleus | 18.43 | 20.72 |
| CDY43360 | Canola | nucleus | 18.43 | 20.72 |
| CDX68024 | Canola | nucleus | 14.25 | 20.49 |
| CDY67299 | Canola | nucleus | 19.16 | 20.47 |
| CDX90262 | Canola | nucleus | 19.16 | 20.42 |
| CDY15850 | Canola | nucleus | 18.43 | 20.27 |
| CDY37724 | Canola | nucleus | 15.97 | 20.12 |
| CDY23739 | Canola | nucleus | 18.67 | 19.84 |
| CDY12068 | Canola | nucleus | 17.44 | 19.83 |
| CDY41556 | Canola | nucleus | 14.0 | 19.66 |
| CDX79527 | Canola | nucleus | 19.41 | 19.46 |
| CDX84689 | Canola | nucleus | 18.92 | 18.87 |
| CDY69852 | Canola | cytosol | 17.44 | 18.59 |
| CDY42724 | Canola | cytosol | 17.2 | 18.47 |
| CDX80046 | Canola | nucleus | 14.25 | 18.35 |
| CDY41557 | Canola | nucleus | 14.25 | 18.35 |
| CDY48016 | Canola | nucleus | 14.25 | 17.79 |
| CDY00446 | Canola | nucleus | 14.74 | 17.65 |
| CDY27523 | Canola | nucleus | 14.0 | 17.65 |
| CDY50131 | Canola | nucleus | 15.72 | 16.75 |
| CDY67263 | Canola | nucleus | 13.27 | 16.46 |
| CDY07975 | Canola | nucleus | 18.92 | 16.35 |
| CDX74030 | Canola | nucleus | 18.92 | 16.31 |
| CDY22136 | Canola | nucleus | 19.41 | 16.26 |
| CDY66272 | Canola | nucleus | 19.41 | 16.16 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 16.46 | 16.14 |
| CDX77783 | Canola | nucleus | 16.71 | 16.0 |
| CDY35966 | Canola | nucleus | 19.41 | 15.99 |
| CDY42577 | Canola | nucleus | 21.38 | 15.96 |
| CDY05301 | Canola | nucleus | 13.76 | 15.95 |
| CDY24657 | Canola | nucleus | 13.27 | 15.88 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 15.97 | 15.82 |
| CDY41059 | Canola | nucleus | 16.46 | 15.69 |
| CDY36357 | Canola | nucleus | 20.88 | 15.68 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 13.02 | 15.32 |
| CDX69279 | Canola | nucleus | 8.85 | 15.25 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 13.51 | 15.15 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 13.51 | 15.11 |
| CDX94301 | Canola | nucleus | 16.22 | 14.93 |
| CDX92807 | Canola | nucleus | 16.46 | 14.89 |
| CDY46690 | Canola | nucleus | 15.48 | 14.72 |
| CDX89316 | Canola | endoplasmic reticulum | 15.97 | 14.54 |
| CDY46689 | Canola | nucleus | 16.46 | 14.47 |
| CDY11989 | Canola | nucleus | 15.23 | 14.35 |
| CDY36753 | Canola | nucleus | 15.23 | 14.25 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 12.53 | 14.05 |
| CDY28918 | Canola | mitochondrion | 16.46 | 13.84 |
| CDY08023 | Canola | nucleus | 12.04 | 13.61 |
| CDX74070 | Canola | cytosol | 11.79 | 13.33 |
| CDY13339 | Canola | mitochondrion | 5.16 | 12.5 |
| CDY25957 | Canola | nucleus | 16.71 | 12.3 |
| CDY40554 | Canola | nucleus | 16.22 | 10.06 |
| CDX69277 | Canola | mitochondrion | 4.42 | 9.68 |
| CDY21399 | Canola | mitochondrion | 3.19 | 8.97 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078GKX6 | UniProt:A0A078GKX6 | EnsemblPlants:CDY26001 | ProteinID:CDY26001 |
| ProteinID:CDY26001.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00033532001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44678 |
| PANTHER:PTHR44678:SF2 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EEE1BD |
| SEG:seg | : | : | : | : | : |
Description
BnaC06g06230DBnaC06g06230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GKX6]
Coordinates
chrLK032184:+:39377..41515
Molecular Weight (calculated)
41695.4 Da
IEP (calculated)
9.159
GRAVY (calculated)
-0.396
Length
407 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMLKKRRLD ENGNGILNDA HITRLTPHDA RKLIERFSTD QLLDILQNAV ARHPDVLDLV RSTADADITQ RKLFIRGLAA ETTTEGLRSL FSSYGDLEEA
101: IVILDKVTAK SKGYGFVTFR HVDGALLALK DPSKKMDGRV TVTQLAAAGN QGAAAAAAHV SDVSMRKIYV ANVPVDMPAD RLLNLFLAYG EIEEGPLGFD
201: KVTGKSRGFA LFVYKTSEGA QAALADPTKV IDGKHLQCKL AIDGKKGKPP GGGPGKDVAA GPGNGHGHGN GMGVAPPPGP YGPAVGGPGG MGGYNGYSGG
301: PPPHHMNSTP SSMGGGPGGY GGAYAGHYGG YGGPGSGGYG LGTGPGAGSG PYRMPPSSMG GSGGYPESGH YGHSSASAYP GQHQPVGSST APRVPPGGMY
401: PNGPPHY
101: IVILDKVTAK SKGYGFVTFR HVDGALLALK DPSKKMDGRV TVTQLAAAGN QGAAAAAAHV SDVSMRKIYV ANVPVDMPAD RLLNLFLAYG EIEEGPLGFD
201: KVTGKSRGFA LFVYKTSEGA QAALADPTKV IDGKHLQCKL AIDGKKGKPP GGGPGKDVAA GPGNGHGHGN GMGVAPPPGP YGPAVGGPGG MGGYNGYSGG
301: PPPHHMNSTP SSMGGGPGGY GGAYAGHYGG YGGPGSGGYG LGTGPGAGSG PYRMPPSSMG GSGGYPESGH YGHSSASAYP GQHQPVGSST APRVPPGGMY
401: PNGPPHY
001: MDMMKKRKLD ENGNGLNTNG GGTIGPTRLS PQDARKIIER FTTDQLLDLL QEAIVRHPDV LESVRLTADS DISQRKLFIR GLAADTTTEG LRSLFSSYGD
101: LEEAIVILDK VTGKSKGYGF VTFMHVDGAL LALKEPSKKI DGRVTVTQLA ASGNQGTGSQ IADISMRKIY VANVPFDMPA DRLLNHFMAY GDVEEGPLGF
201: DKVTGKSRGF ALFVYKTAEG AQAALADPVK VIDGKHLNCK LAVDGKKGGK PGMPQAQDGG SGHGHVHGEG MGMVRPAGPY GAAGGISAYG GYSGGPPAHH
301: MNSTHSSMGV GSAGYGGHYG GYGGPGGTGV YGGLGGGYGG PGTGSGQYRM PPSSMPGGGG YPESGHYGLS SSAGYPGQHH QAVGTSPVPR VPHGGMYPNG
401: PPNY
101: LEEAIVILDK VTGKSKGYGF VTFMHVDGAL LALKEPSKKI DGRVTVTQLA ASGNQGTGSQ IADISMRKIY VANVPFDMPA DRLLNHFMAY GDVEEGPLGF
201: DKVTGKSRGF ALFVYKTAEG AQAALADPVK VIDGKHLNCK LAVDGKKGGK PGMPQAQDGG SGHGHVHGEG MGMVRPAGPY GAAGGISAYG GYSGGPPAHH
301: MNSTHSSMGV GSAGYGGHYG GYGGPGGTGV YGGLGGGYGG PGTGSGQYRM PPSSMPGGGG YPESGHYGLS SSAGYPGQHH QAVGTSPVPR VPHGGMYPNG
401: PPNY
Arabidopsis Description
UBA2CUBP1-associated protein 2C [Source:UniProtKB/Swiss-Prot;Acc:Q9LKA4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.