Factsheet for VIT_19s0014g01570.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26001	Canola	nucleus	61.02	67.32
AT3G15010.2	Thale cress	nucleus	60.36	67.08
CDY55846	Canola	nucleus	59.69	66.83
Bra039664.1-P	Field mustard	nucleus	60.8	65.78
CDY24106	Canola	nucleus	60.13	65.38
KRH26210	Soybean	nucleus	62.81	64.53
CDY25867	Canola	nucleus	58.13	64.44
KRH55109	Soybean	nucleus	63.7	64.41
Bra038113.1-P	Field mustard	nucleus	59.24	64.25
GSMUA_Achr5P09550_001	Banana	nucleus	52.78	63.71
PGSC0003DMT400039802	Potato	nucleus	57.91	58.3
GSMUA_Achr5P09540_001	Banana	nucleus	49.67	57.47
Os01t0614500-01	Rice	nucleus	52.34	52.57
TraesCS3A01G220400.1	Wheat	nucleus	51.22	52.27
HORVU3Hr1G053990.1	Barley	nucleus	51.22	52.15
TraesCS3D01G232300.1	Wheat	nucleus	51.0	52.05
TraesCS3B01G250700.1	Wheat	golgi	51.0	52.05
EES03272	Sorghum	nucleus	51.22	51.69
Zm00001d044469_P003	Maize	nucleus	51.22	51.45
Zm00001d011336_P002	Maize	nucleus	51.22	51.34
Solyc12g014210.1.1	Tomato	nucleus	37.86	50.75
VIT_08s0007g06300.t01	Wine grape	nucleus	30.07	39.47
PGSC0003DMT400032256	Potato	nucleus	25.84	37.18
PGSC0003DMT400031324	Potato	cytosol	11.14	35.97
VIT_07s0031g01290.t01	Wine grape	nucleus	30.29	34.69
VIT_08s0056g00690.t01	Wine grape	nucleus	34.3	33.26
PGSC0003DMT400031418	Potato	extracellular, golgi	24.5	30.22
VIT_06s0009g01190.t01	Wine grape	nucleus	28.73	28.23
VIT_06s0009g01180.t01	Wine grape	mitochondrion, nucleus, plastid	31.63	27.41
VIT_18s0122g00660.t01	Wine grape	nucleus, plastid	16.26	25.61
VIT_13s0019g03610.t01	Wine grape	nucleus	13.81	25.1
VIT_15s0048g02630.t01	Wine grape	nucleus	14.92	25.09
VIT_18s0089g00920.t01	Wine grape	nucleus	14.7	24.54
VIT_18s0117g00150.t01	Wine grape	nucleus	19.6	24.51
VIT_19s0015g00920.t01	Wine grape	nucleus	18.93	24.43
VIT_18s0001g05840.t01	Wine grape	nucleus	14.92	24.28
VIT_09s0002g02350.t01	Wine grape	cytosol	18.26	23.23
VIT_12s0057g01280.t01	Wine grape	nucleus	13.14	22.87
VIT_14s0066g00480.t01	Wine grape	nucleus	18.49	22.07
VIT_12s0057g00480.t01	Wine grape	nucleus	21.38	20.08
VIT_05s0049g01660.t01	Wine grape	nucleus	20.49	19.83
VIT_07s0031g00600.t01	Wine grape	cytosol	15.81	19.78
VIT_07s0005g03980.t01	Wine grape	nucleus	18.71	19.35
VIT_19s0090g01660.t01	Wine grape	nucleus	20.49	19.25
VIT_16s0098g01050.t01	Wine grape	endoplasmic reticulum, extracellular	11.14	17.18
VIT_18s0001g08640.t01	Wine grape	nucleus	14.25	13.59

Protein Annotations

EntrezGene:100248626	wikigene:100248626	Gene3D:3.30.70.330	MapMan:35.1	UniProt:A5ADJ5	EMBL:AM423811
ProteinID:CAN66609	ProteinID:CAN66609.1	ProteinID:CCB46269	ProteinID:CCB46269.1	EMBL:FN595229	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006950	GO:GO:0006952	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008219	GO:GO:0009058	GO:GO:0009693	GO:GO:0009987
GO:GO:0010150	InterPro:IPR000504	InterPro:IPR012677	EntrezGene:LOC100248626	wikigene:LOC100248626	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44678	PANTHER:PTHR44678:SF2	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	TIGR:TC59363	UniParc:UPI000151E5AD	ArrayExpress:VIT_19s0014g01570	EnsemblPlantsGene:VIT_19s0014g01570
EnsemblPlants:VIT_19s0014g01570.t01	unigene:Vvi.7422	RefSeq:XP_002285377	RefSeq:XP_002285377.1	RefSeq:XP_010644134.1	RefSeq:XP_019072722.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr19:+:1660303..1661728

Molecular Weight (calculated)

45422.8 Da

IEP (calculated)

7.858

GRAVY (calculated)

-0.210

Length

449 amino acids

Sequence
(BLAST)

001: MDATKKRKMD ENGLVSTDGD SLTKLAPEDA RKIIEPFGHD QLLEILQNAA VRHLDVLDAI RSIADRDLTQ RKLFIRGLGW DTTTEGLRQL FSAYGELEEA
101: VVILDKVTAK SKGYGFVTFK HVDGALLALK EPSKKIDGRM TVTQLAASGL SGPASNASAV DVSMRKIYVA NVPVDMPADR LLAHFSSYGE IEEGPLGFDK
201: QTGKSRGFAL FVYKTAEAAQ AALVDPTKMI DGRQLVCKLA IEGKKGKTGG PAQAPTGVPG EAGHGDGLGV PPQGSMPGSL GSQYPGGPGG ISAYGGFSGG
301: PPPLGHHHPL NSSLPSSLGG GPGLSSQVPS SLGGSAGYGA GLGGPYGSAH YGGPNSAGYS GLGGAGGLGG AAGALGVAGG ALGVAGGGSS LYRLPPSTVG
401: MPSGGYPDSG HYSLSSSSAY PSQIHQPAGT SPVPRVPPGG MYPSGPPYY

Best Arabidopsis Sequence Match ( AT3G15010.2 )
(BLAST)

001: MDMMKKRKLD ENGNGLNTNG GGTIGPTRLS PQDARKIIER FTTDQLLDLL QEAIVRHPDV LESVRLTADS DISQRKLFIR GLAADTTTEG LRSLFSSYGD
101: LEEAIVILDK VTGKSKGYGF VTFMHVDGAL LALKEPSKKI DGRVTVTQLA ASGNQGTGSQ IADISMRKIY VANVPFDMPA DRLLNHFMAY GDVEEGPLGF
201: DKVTGKSRGF ALFVYKTAEG AQAALADPVK VIDGKHLNCK LAVDGKKGGK PGMPQAQDGG SGHGHVHGEG MGMVRPAGPY GAAGGISAYG GYSGGPPAHH
301: MNSTHSSMGV GSAGYGGHYG GYGGPGGTGV YGGLGGGYGG PGTGSGQYRM PPSSMPGGGG YPESGHYGLS SSAGYPGQHH QAVGTSPVPR VPHGGMYPNG
401: PPNY

Arabidopsis Description

UBA2CUBP1-associated protein 2C [Source:UniProtKB/Swiss-Prot;Acc:Q9LKA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.