Factsheet for VIT_12s0057g00480.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74025	Soybean	nucleus	79.92	80.42
KRH14098	Soybean	nucleus	80.33	80.17
Solyc07g048030.2.1	Tomato	nucleus	70.08	76.66
VIT_19s0090g01660.t01	Wine grape	nucleus	72.18	72.18
PGSC0003DMT400074192	Potato	nucleus	70.29	70.89
Solyc12g006180.1.1	Tomato	nucleus	63.81	69.63
GSMUA_Achr10P...	Banana	nucleus	60.67	65.91
TraesCS4D01G152200.1	Wheat	nucleus	63.18	65.23
TraesCS4A01G150600.1	Wheat	nucleus	63.18	65.23
HORVU0Hr1G008280.1	Barley	nucleus	63.18	65.23
GSMUA_Achr10P...	Banana	nucleus	62.76	65.22
TraesCSU01G068500.1	Wheat	nucleus	62.76	64.79
Os11t0637700-01	Rice	plasma membrane	63.18	64.67
GSMUA_Achr4P33100_001	Banana	nucleus	58.58	63.35
GSMUA_Achr6P10970_001	Banana	nucleus	65.69	62.8
EER98147	Sorghum	nucleus	54.81	57.84
EER96020	Sorghum	nucleus	55.02	57.8
EER97452	Sorghum	nucleus	56.9	57.75
Zm00001d007772_P001	Maize	nucleus	53.97	57.46
Os07t0584500-01	Rice	nucleus	56.69	57.42
Zm00001d019079_P001	Maize	cytosol	53.56	57.14
TraesCS2B01G216600.2	Wheat	cytosol	55.86	56.69
TraesCS2D01G197500.2	Wheat	nucleus	55.65	56.6
Zm00001d006704_P002	Maize	nucleus	56.28	55.58
Zm00001d019084_P002	Maize	nucleus	52.51	55.29
TraesCS2A01G190400.1	Wheat	plastid	55.86	50.28
Zm00001d021950_P007	Maize	endoplasmic reticulum, nucleus	56.07	49.54
OQU83904	Sorghum	nucleus	46.03	48.89
Zm00001d019086_P001	Maize	nucleus	53.77	48.31
GSMUA_Achr3P02300_001	Banana	nucleus	62.97	44.33
VIT_05s0049g01660.t01	Wine grape	nucleus	42.26	43.53
VIT_07s0005g03980.t01	Wine grape	nucleus	38.28	42.17
VIT_19s0015g00920.t01	Wine grape	nucleus	29.92	41.09
VIT_18s0117g00150.t01	Wine grape	nucleus	30.54	40.67
VIT_14s0066g00480.t01	Wine grape	nucleus	29.29	37.23
VIT_09s0002g02350.t01	Wine grape	cytosol	27.2	36.83
VIT_12s0057g01280.t01	Wine grape	nucleus	19.46	36.05
VIT_07s0031g00600.t01	Wine grape	cytosol	24.9	33.15
VIT_18s0089g00920.t01	Wine grape	nucleus	14.44	25.65
VIT_18s0001g08640.t01	Wine grape	nucleus	24.9	25.27
VIT_18s0122g00660.t01	Wine grape	nucleus, plastid	13.81	23.16
VIT_15s0048g02630.t01	Wine grape	nucleus	12.55	22.47
VIT_18s0001g05840.t01	Wine grape	nucleus	12.76	22.1
VIT_19s0014g01570.t01	Wine grape	nucleus	20.08	21.38
VIT_08s0007g06300.t01	Wine grape	nucleus	15.06	21.05
VIT_13s0019g03610.t01	Wine grape	nucleus	10.67	20.65
VIT_08s0056g00690.t01	Wine grape	nucleus	16.11	16.63
VIT_06s0009g01190.t01	Wine grape	nucleus	15.9	16.63
VIT_07s0031g01290.t01	Wine grape	nucleus	13.39	16.33
VIT_06s0009g01180.t01	Wine grape	mitochondrion, nucleus, plastid	15.9	14.67
VIT_16s0098g01050.t01	Wine grape	endoplasmic reticulum, extracellular	8.16	13.4

Protein Annotations

EntrezGene:100246008	wikigene:100246008	Gene3D:3.30.70.330	MapMan:35.1	ProteinID:CCB51708	ProteinID:CCB51708.1
InterPro:DAZAP1_RRM2	UniProt:F6HHL2	EMBL:FN595759	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	EntrezGene:LOC100246008	wikigene:LOC100246008
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44291	PANTHER:PTHR44291:SF2	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000198453E	ArrayExpress:VIT_12s0057g00480	EnsemblPlantsGene:VIT_12s0057g00480
EnsemblPlants:VIT_12s0057g00480.t01	unigene:Vvi.1736	RefSeq:XP_002272993	RefSeq:XP_002272993.1	RefSeq:XP_010657420.1	SEG:seg

Description

No Description!

Coordinates

chr12:-:9070596..9075910

Molecular Weight (calculated)

49943.4 Da

IEP (calculated)

9.427

GRAVY (calculated)

-0.447

Length

478 amino acids

Sequence
(BLAST)

001: MQSDLGKLFI GGISWDTNED RLKDYFSNYG EVVEAVIMKD RTTGRARGFG FVVFADPAVA ERVIKEKHNI DGRMVEAKKA VPKDDQSILS RNSGSIHGSP
101: GPGRTRKIFV GGLASTVTES DFKKYFDQFG AITDVVVMYD HNTQRPRGFG FITYESEEAV DKVLLKTFHE LNGKMVEVKR AVPKELSPGP IRSQLGGFNY
201: GLSRVNSFLS AYNQGYAPST VGGYGVRMDG RFSPIAGGRS GFPPFGSGYG MGMNFEPGLS QSYGGSANFN NNLNYGRGLN PYYIGNTNRF NSTIGYDGGN
301: GGNSSFFSSA TRNLWGNGGL NFGTNSATSS AFTGSASGTT GGGAFGNSGT SWGSSLISAQ GGGSNISSNS GNLGYGGGDS SYGLGVGGYG RNSGTSVAPT
401: SSYAASNSGY DGALAEFYSG GSVYGDSTWR PSNAERDGSG SFGYGLGNAA SDVPAKSSPG YVGGYSVTKR QSNRGIAA

Best Arabidopsis Sequence Match ( AT3G07810.1 )
(BLAST)

001: MQSDNGKLFI GGISWDTNEE RLKEYFSSFG EVIEAVILKD RTTGRARGFG FVVFADPAVA EIVITEKHNI DGRLVEAKKA VPRDDQNMVN RSNSSSIQGS
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GIAT

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JFN7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.