Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P17700_001 | Banana | cytosol | 14.98 | 69.89 |
| VIT_05s0049g01660.t01 | Wine grape | nucleus | 74.19 | 69.4 |
| GSMUA_Achr10P... | Banana | nucleus | 38.71 | 67.74 |
| GSMUA_Achr1P10970_001 | Banana | nucleus | 63.36 | 63.07 |
| Zm00001d032739_P001 | Maize | nucleus | 59.22 | 58.01 |
| KXG38359 | Sorghum | nucleus | 59.91 | 57.4 |
| TraesCS1B01G168200.1 | Wheat | nucleus | 57.6 | 55.31 |
| TraesCS1A01G150600.1 | Wheat | nucleus | 57.6 | 55.07 |
| TraesCS1D01G147600.1 | Wheat | nucleus | 57.6 | 55.07 |
| Zm00001d014058_P002 | Maize | plastid | 58.99 | 53.11 |
| HORVU1Hr1G039790.1 | Barley | nucleus | 57.6 | 49.02 |
| Solyc09g072790.2.1 | Tomato | nucleus | 40.78 | 44.92 |
| PGSC0003DMT400009762 | Potato | nucleus | 40.55 | 44.33 |
| VIT_19s0090g01660.t01 | Wine grape | nucleus | 44.47 | 40.38 |
| VIT_12s0057g00480.t01 | Wine grape | nucleus | 42.17 | 38.28 |
| VIT_19s0015g00920.t01 | Wine grape | nucleus | 29.72 | 37.07 |
| VIT_09s0002g02350.t01 | Wine grape | cytosol | 29.49 | 36.26 |
| VIT_18s0117g00150.t01 | Wine grape | nucleus | 29.49 | 35.65 |
| VIT_14s0066g00480.t01 | Wine grape | nucleus | 30.88 | 35.64 |
| VIT_12s0057g01280.t01 | Wine grape | nucleus | 20.51 | 34.5 |
| VIT_07s0031g00600.t01 | Wine grape | cytosol | 23.73 | 28.69 |
| VIT_18s0089g00920.t01 | Wine grape | nucleus | 15.67 | 25.28 |
| VIT_18s0001g08640.t01 | Wine grape | nucleus | 26.96 | 24.84 |
| VIT_18s0122g00660.t01 | Wine grape | nucleus, plastid | 14.75 | 22.46 |
| VIT_15s0048g02630.t01 | Wine grape | nucleus | 13.59 | 22.1 |
| VIT_13s0019g03610.t01 | Wine grape | nucleus | 11.75 | 20.65 |
| VIT_08s0007g06300.t01 | Wine grape | nucleus | 15.21 | 19.3 |
| VIT_19s0014g01570.t01 | Wine grape | nucleus | 19.35 | 18.71 |
| VIT_18s0001g05840.t01 | Wine grape | nucleus | 11.75 | 18.48 |
| VIT_16s0098g01050.t01 | Wine grape | endoplasmic reticulum, extracellular | 10.14 | 15.12 |
| VIT_07s0031g01290.t01 | Wine grape | nucleus | 13.36 | 14.8 |
| VIT_08s0056g00690.t01 | Wine grape | nucleus | 15.67 | 14.69 |
| VIT_06s0009g01190.t01 | Wine grape | nucleus | 15.21 | 14.44 |
| VIT_06s0009g01180.t01 | Wine grape | mitochondrion, nucleus, plastid | 14.29 | 11.97 |
Protein Annotations
| EntrezGene:100263471 | wikigene:100263471 | Gene3D:3.30.70.330 | MapMan:35.1 | ProteinID:CCB60153 | ProteinID:CCB60153.1 |
| InterPro:DAZAP1_RRM2 | UniProt:F6HZN8 | EMBL:FN596502 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | EntrezGene:LOC100263471 | wikigene:LOC100263471 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44291 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI00021096F9 | ArrayExpress:VIT_07s0005g03980 | EnsemblPlantsGene:VIT_07s0005g03980 | EnsemblPlants:VIT_07s0005g03980.t01 | RefSeq:XP_002274734 |
| RefSeq:XP_002274734.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr7:-:7057539..7062215
Molecular Weight (calculated)
44175.0 Da
IEP (calculated)
6.692
GRAVY (calculated)
-0.687
Length
434 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSDEGKLFV GGIPWDTTEE KLKEYFNQYG DVTQTVIMRD KTTGRPRGFG FVVFADPSVL DAVLQEKHTI DGRTVEAKRA LSREEQHTSR PGNSNTGRSS
101: SGMGGNFKTK KIFVGGLPST LTEEGFRQYF ETYGHVTDVV VMYDQNTQRP RGFGFISFDT EDAVDRVLHK TFHDLNGKLV EVKRALPKDA NPGGGGRSGG
201: YQGYGASGAN TSAYEGRMDG NRFMPPQTTG GGFPPYSGYG APGYGYGAAN SAVGYGGYGS YGVGGYGSAN TGFGGPAGAY GNPNAPNAGY VSGPPGAMKS
301: QWNNQTPSGY GASGYGSNAA YGATGPWNAP GGAGVSGPMG QSPSGASGYG SQGFGYGNYG GSDGSYSGGY GAAGGRAGSA PSSGGSASGE QGTGGGYMGS
401: GYGDANGNQG YSNAGWRSDP SQGAAGYGGG YGGQ
101: SGMGGNFKTK KIFVGGLPST LTEEGFRQYF ETYGHVTDVV VMYDQNTQRP RGFGFISFDT EDAVDRVLHK TFHDLNGKLV EVKRALPKDA NPGGGGRSGG
201: YQGYGASGAN TSAYEGRMDG NRFMPPQTTG GGFPPYSGYG APGYGYGAAN SAVGYGGYGS YGVGGYGSAN TGFGGPAGAY GNPNAPNAGY VSGPPGAMKS
301: QWNNQTPSGY GASGYGSNAA YGATGPWNAP GGAGVSGPMG QSPSGASGYG SQGFGYGNYG GSDGSYSGGY GAAGGRAGSA PSSGGSASGE QGTGGGYMGS
401: GYGDANGNQG YSNAGWRSDP SQGAAGYGGG YGGQ
001: MDSDQGKLFV GGISWETDED KLREHFTNYG EVSQAIVMRD KLTGRPRGFG FVIFSDPSVL DRVLQEKHSI DTREVDVKRA MSREEQQVSG RTGNLNTSRS
101: SGGDAYNKTK KIFVGGLPPT LTDEEFRQYF EVYGPVTDVA IMYDQATNRP RGFGFVSFDS EDAVDSVLHK TFHDLSGKQV EVKRALPKDA NPGGGGRSMG
201: GGGSGGYQGY GGNESSYDGR MDSNRFLQHQ SVGNGLPSYG SSGYGAGYGN GSNGAGYGAY GGYTGSAGGY GAGATAGYGA TNIPGAGYGS STGVAPRNSW
301: DTPASSGYGN PGYGSGAAHS GYGVPGAAPP TQSPSGYSNQ GYGYGGYSGS DSGYGNQAAY GVVGGRPSGG GSNNPGSGGY MGGGYGDGSW RSDPSQGYGG
401: GYNDGQGRQG Q
101: SGGDAYNKTK KIFVGGLPPT LTDEEFRQYF EVYGPVTDVA IMYDQATNRP RGFGFVSFDS EDAVDSVLHK TFHDLSGKQV EVKRALPKDA NPGGGGRSMG
201: GGGSGGYQGY GGNESSYDGR MDSNRFLQHQ SVGNGLPSYG SSGYGAGYGN GSNGAGYGAY GGYTGSAGGY GAGATAGYGA TNIPGAGYGS STGVAPRNSW
301: DTPASSGYGN PGYGSGAAHS GYGVPGAAPP TQSPSGYSNQ GYGYGGYSGS DSGYGNQAAY GVVGGRPSGG GSNNPGSGGY MGGGYGDGSW RSDPSQGYGG
401: GYNDGQGRQG Q
Arabidopsis Description
RNP1Heterogeneous nuclear ribonucleoprotein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W034]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.