Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG94993 | Soybean | nucleus | 63.71 | 61.59 |
| KRH66628 | Soybean | nucleus | 63.93 | 60.91 |
| CDX72106 | Canola | nucleus | 58.1 | 59.12 |
| Bra007277.1-P | Field mustard | nucleus | 56.8 | 58.57 |
| CDY27186 | Canola | nucleus | 56.8 | 58.57 |
| GSMUA_Achr6P15950_001 | Banana | nucleus | 56.59 | 56.22 |
| CDX76015 | Canola | nucleus | 36.93 | 56.07 |
| AT3G56860.10 | Thale cress | nucleus | 57.67 | 55.86 |
| CDY06947 | Canola | nucleus | 51.84 | 55.81 |
| AT2G41060.3 | Thale cress | nucleus | 53.78 | 55.21 |
| Bra016954.1-P | Field mustard | nucleus | 52.27 | 55.0 |
| Bra014667.1-P | Field mustard | nucleus | 35.64 | 54.1 |
| CDY57580 | Canola | nucleus | 51.19 | 53.5 |
| VIT_06s0009g01180.t01 | Wine grape | mitochondrion, nucleus, plastid | 54.43 | 48.65 |
| Zm00001d040344_P001 | Maize | extracellular, plasma membrane | 47.08 | 48.02 |
| EES02736 | Sorghum | plastid | 47.52 | 47.41 |
| TraesCS3B01G211700.1 | Wheat | nucleus | 45.79 | 46.8 |
| TraesCS3D01G186500.1 | Wheat | nucleus | 48.16 | 46.46 |
| HORVU3Hr1G037280.1 | Barley | nucleus, plastid | 48.6 | 46.11 |
| TraesCS3A01G181900.1 | Wheat | nucleus | 47.52 | 45.83 |
| Os01t0265800-01 | Rice | nucleus | 47.3 | 44.69 |
| GSMUA_Achr10P... | Banana | mitochondrion, nucleus | 41.04 | 43.78 |
| VIT_06s0009g01190.t01 | Wine grape | nucleus | 41.47 | 42.01 |
| CDY47382 | Canola | golgi, plastid | 35.42 | 39.42 |
| VIT_07s0031g01290.t01 | Wine grape | nucleus | 32.4 | 38.27 |
| GSMUA_Achr10P... | Banana | nucleus | 18.14 | 36.36 |
| VIT_19s0014g01570.t01 | Wine grape | nucleus | 33.26 | 34.3 |
| HORVU6Hr1G054690.5 | Barley | plastid | 13.82 | 34.04 |
| GSMUA_AchrUn_... | Banana | nucleus | 31.32 | 33.8 |
| GSMUA_Achr4P09210_001 | Banana | nucleus | 32.18 | 33.71 |
| VIT_08s0007g06300.t01 | Wine grape | nucleus | 23.76 | 32.16 |
| KXG30578 | Sorghum | nucleus | 25.7 | 31.99 |
| HORVU2Hr1G116150.4 | Barley | nucleus | 28.29 | 31.64 |
| Os02t0602600-00 | Rice | nucleus | 25.92 | 31.09 |
| TraesCS2D01G529100.1 | Wheat | nucleus | 33.26 | 30.26 |
| TraesCS2A01G526400.1 | Wheat | nucleus | 33.26 | 30.26 |
| TraesCS2B01G556700.1 | Wheat | nucleus | 33.05 | 30.06 |
| Os04t0636900-02 | Rice | nucleus | 33.26 | 29.9 |
| Zm00001d002141_P006 | Maize | nucleus | 33.26 | 29.56 |
| EES12939 | Sorghum | nucleus | 33.05 | 29.03 |
| Zm00001d026397_P001 | Maize | nucleus, plasma membrane | 32.61 | 28.98 |
| EES10068 | Sorghum | nucleus | 23.76 | 25.52 |
| HORVU2Hr1G116230.1 | Barley | nucleus | 19.87 | 22.66 |
| VIT_19s0015g00920.t01 | Wine grape | nucleus | 16.85 | 22.41 |
| VIT_12s0057g01280.t01 | Wine grape | nucleus | 12.31 | 22.09 |
| VIT_18s0122g00660.t01 | Wine grape | nucleus, plastid | 13.39 | 21.75 |
| VIT_18s0117g00150.t01 | Wine grape | nucleus | 16.85 | 21.73 |
| VIT_09s0002g02350.t01 | Wine grape | cytosol | 16.41 | 21.53 |
| VIT_15s0048g02630.t01 | Wine grape | nucleus | 12.31 | 21.35 |
| VIT_13s0019g03610.t01 | Wine grape | nucleus | 11.02 | 20.65 |
| VIT_14s0066g00480.t01 | Wine grape | nucleus | 16.41 | 20.21 |
| VIT_18s0001g05840.t01 | Wine grape | nucleus | 11.88 | 19.93 |
| VIT_18s0089g00920.t01 | Wine grape | nucleus | 11.23 | 19.33 |
| VIT_07s0031g00600.t01 | Wine grape | cytosol | 13.17 | 16.99 |
| VIT_12s0057g00480.t01 | Wine grape | nucleus | 16.63 | 16.11 |
| VIT_07s0005g03980.t01 | Wine grape | nucleus | 14.69 | 15.67 |
| VIT_19s0090g01660.t01 | Wine grape | nucleus | 15.98 | 15.48 |
| VIT_05s0049g01660.t01 | Wine grape | nucleus | 15.12 | 15.09 |
| VIT_16s0098g01050.t01 | Wine grape | endoplasmic reticulum, extracellular | 8.42 | 13.4 |
| VIT_18s0001g08640.t01 | Wine grape | nucleus | 10.58 | 10.4 |
Protein Annotations
| EntrezGene:100243393 | wikigene:100243393 | Gene3D:3.30.70.330 | MapMan:35.1 | EMBL:AM476911 | ProteinID:CAN72884 |
| ProteinID:CAN72884.1 | ProteinID:CCB55968 | ProteinID:CCB55968.1 | ncoils:Coil | UniProt:F6HMU3 | EMBL:FN595995 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 |
| EntrezGene:LOC100243393 | wikigene:LOC100243393 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44578 |
| PANTHER:PTHR44578:SF2 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | TIGR:TC54119 |
| TIGR:TC64934 | UniParc:UPI0001983ACB | ArrayExpress:VIT_08s0056g00690 | EnsemblPlantsGene:VIT_08s0056g00690 | EnsemblPlants:VIT_08s0056g00690.t01 | unigene:Vvi.6225 |
| RefSeq:XP_002270568 | RefSeq:XP_002270568.1 | RefSeq:XP_010653136.1 | RefSeq:XP_019077217.1 | RefSeq:XP_019077218.1 | SEG:seg |
Description
No Description!
Coordinates
chr8:-:968590..973292
Molecular Weight (calculated)
49595.2 Da
IEP (calculated)
5.079
GRAVY (calculated)
-0.613
Length
463 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKKRKLEPK IVEPPPPQEV EEEAEEIEED EEVEEEEYEE VEEEEDEEEE EGGGTQNAAK KSASTSAVDD DDDEEPIQKI LEPFSKDQLI NLLREAAEKH
101: ADVAERLRRV ADEDPVHRKI FVHGLGWDTN AETLISVFKD YGEIEDCRAV CDKLSGKSKG YGFILFKTRS GARKALKQPQ KKIGNRMTAC QLASIGPVPS
201: PAVGQAAMSV SAAQSVSEYT QRKIYVSNVG AELDPQKLLV FFSKYGEIEE GPLGLDKQTG KPKGFCLFVY KTAEGAKKAL DEPHKNFDGH ILHCQKAIDG
301: PKPGKQQQLQ QQQHHHNLPN THYTKSEITN FMGPQGHLMA PSGPPAIPYN QGSAAQALNP ALGQALTALL ATQGAGLGLT NLLGTLGSAS VGAAVNPSVA
401: GAGHGMQGGY PNQAVAGNIS SGMVGGYGSQ GAYGNQQMGQ GSSSGRSQHG VGHMGGMAPY MGH
101: ADVAERLRRV ADEDPVHRKI FVHGLGWDTN AETLISVFKD YGEIEDCRAV CDKLSGKSKG YGFILFKTRS GARKALKQPQ KKIGNRMTAC QLASIGPVPS
201: PAVGQAAMSV SAAQSVSEYT QRKIYVSNVG AELDPQKLLV FFSKYGEIEE GPLGLDKQTG KPKGFCLFVY KTAEGAKKAL DEPHKNFDGH ILHCQKAIDG
301: PKPGKQQQLQ QQQHHHNLPN THYTKSEITN FMGPQGHLMA PSGPPAIPYN QGSAAQALNP ALGQALTALL ATQGAGLGLT NLLGTLGSAS VGAAVNPSVA
401: GAGHGMQGGY PNQAVAGNIS SGMVGGYGSQ GAYGNQQMGQ GSSSGRSQHG VGHMGGMAPY MGH
001: MTKKRKLEGE ESNEAEEPSQ KLKQTPEEEQ QLVIKNQDNQ GDVEEVEYEE VEEEQEEEVE DDDDEDDGDE NEDQTDGNRI EAAATSGSGN QEDDDDEPIQ
101: DLLEPFSKEQ VLSLLKEAAE KHVDVANRIR EVADEDPVHR KIFVHGLGWD TKTETLIEAF KQYGEIEDCK AVFDKISGKS KGYGFILYKS RSGARNALKQ
201: PQKKIGSRMT ACQLASKGPV FGGAPIAAAA VSAPAQHSNS EHTQKKIYVS NVGAELDPQK LLMFFSKFGE IEEGPLGLDK YTGRPKGFCL FVYKSSESAK
301: RALEEPHKTF EGHILHCQKA IDGPKPGKQQ QHHHNPHAYN NPRYQRNDNN GYGPPGGHGH LMAGNPAGMG GPTAQVINPA IGQALTALLA SQGAGLAFNP
401: AIGQALLGSL GTAAGVNPGN GVGMPTGYGT QAMAPGTMPG YGTQPGLQGG YQTPQPGQGG TSRGQHGVGP YGTPYMGH
101: DLLEPFSKEQ VLSLLKEAAE KHVDVANRIR EVADEDPVHR KIFVHGLGWD TKTETLIEAF KQYGEIEDCK AVFDKISGKS KGYGFILYKS RSGARNALKQ
201: PQKKIGSRMT ACQLASKGPV FGGAPIAAAA VSAPAQHSNS EHTQKKIYVS NVGAELDPQK LLMFFSKFGE IEEGPLGLDK YTGRPKGFCL FVYKSSESAK
301: RALEEPHKTF EGHILHCQKA IDGPKPGKQQ QHHHNPHAYN NPRYQRNDNN GYGPPGGHGH LMAGNPAGMG GPTAQVINPA IGQALTALLA SQGAGLAFNP
401: AIGQALLGSL GTAAGVNPGN GVGMPTGYGT QAMAPGTMPG YGTQPGLQGG YQTPQPGQGG TSRGQHGVGP YGTPYMGH
Arabidopsis Description
UBA2AUBP1-associated protein 2A [Source:UniProtKB/Swiss-Prot;Acc:Q9LES2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.