Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G186500.1 | Wheat | nucleus | 98.54 | 98.54 |
| TraesCS3B01G211700.1 | Wheat | nucleus | 92.71 | 98.23 |
| HORVU3Hr1G037280.1 | Barley | nucleus, plastid | 93.54 | 92.01 |
| Os01t0265800-01 | Rice | nucleus | 72.08 | 70.61 |
| Zm00001d040344_P001 | Maize | extracellular, plasma membrane | 66.04 | 69.82 |
| EES02736 | Sorghum | plastid | 65.62 | 67.89 |
| CDX76015 | Canola | nucleus | 31.46 | 49.51 |
| KRG94993 | Soybean | nucleus | 48.33 | 48.43 |
| KRH66628 | Soybean | nucleus | 48.96 | 48.35 |
| CDY27186 | Canola | nucleus | 44.58 | 47.66 |
| Bra014667.1-P | Field mustard | nucleus | 30.21 | 47.54 |
| VIT_08s0056g00690.t01 | Wine grape | nucleus | 45.83 | 47.52 |
| CDX72106 | Canola | nucleus | 45.0 | 47.47 |
| Solyc01g008970.2.1 | Tomato | nucleus | 37.08 | 47.34 |
| Bra007277.1-P | Field mustard | nucleus | 44.17 | 47.22 |
| CDY06947 | Canola | nucleus | 42.29 | 47.21 |
| AT2G41060.3 | Thale cress | nucleus | 43.54 | 46.34 |
| Bra016954.1-P | Field mustard | nucleus | 42.29 | 46.14 |
| AT3G56860.10 | Thale cress | nucleus | 45.42 | 45.61 |
| CDY57580 | Canola | nucleus | 42.08 | 45.6 |
| KRH14673 | Soybean | nucleus | 45.21 | 43.93 |
| PGSC0003DMT400058431 | Potato | nucleus | 44.79 | 43.88 |
| VIT_06s0009g01180.t01 | Wine grape | mitochondrion, nucleus, plastid | 47.08 | 43.63 |
| KRH73477 | Soybean | nucleus | 44.58 | 43.15 |
| CDY47382 | Canola | golgi, plastid | 30.42 | 35.1 |
| TraesCS3A01G220400.1 | Wheat | nucleus | 28.12 | 30.68 |
| TraesCS2A01G526400.1 | Wheat | nucleus | 32.29 | 30.45 |
| TraesCS7A01G360900.1 | Wheat | nucleus | 17.92 | 21.45 |
| TraesCS6A01G187000.1 | Wheat | nucleus | 17.29 | 20.1 |
| TraesCS7A01G282600.1 | Wheat | cytosol | 14.58 | 20.0 |
| TraesCS7A01G178700.2 | Wheat | nucleus | 11.67 | 18.42 |
| TraesCS6A01G291100.1 | Wheat | nucleus | 12.92 | 18.18 |
| TraesCS4A01G150600.1 | Wheat | nucleus | 17.29 | 17.93 |
| TraesCS1A01G234200.1 | Wheat | cytosol | 13.54 | 17.81 |
| TraesCS3A01G485000.1 | Wheat | cytosol | 13.75 | 17.69 |
| TraesCS4A01G068100.1 | Wheat | nucleus | 9.17 | 17.67 |
| TraesCS7A01G398200.1 | Wheat | cytosol, mitochondrion, nucleus | 10.42 | 17.67 |
| TraesCS3A01G389600.1 | Wheat | nucleus | 10.42 | 16.84 |
| TraesCS6A01G278300.3 | Wheat | plastid | 10.21 | 16.78 |
| TraesCS5A01G405300.1 | Wheat | nucleus | 12.08 | 16.16 |
| TraesCS4A01G106800.2 | Wheat | cytosol, mitochondrion, nucleus | 10.0 | 15.95 |
| TraesCS1A01G150600.1 | Wheat | nucleus | 13.96 | 14.76 |
| TraesCS2A01G190400.1 | Wheat | plastid | 16.04 | 14.5 |
| TraesCS3A01G499100.1 | Wheat | cytosol, nucleus, plastid | 8.96 | 13.78 |
| TraesCS2A01G267500.1 | Wheat | nucleus | 9.17 | 11.83 |
| TraesCS6A01G318100.1 | Wheat | nucleus | 11.04 | 10.88 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G181900.1 | EnsemblPlantsGene:TraesCS3A01G181900 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | ncoils:Coil |
| PANTHER:PTHR44578 | PANTHER:PTHR44578:SF4 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 |
| SUPFAM:SSF54928 | TIGR:cd12384 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr3A:-:210259605..210261047
Molecular Weight (calculated)
49559.4 Da
IEP (calculated)
4.787
GRAVY (calculated)
-0.383
Length
480 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKKRKLEPK FTLAANSPAA KAPAAAKIAE PAAPLPQPET LAEYYPTSSQ TVAQESGSIA GGAAVKQEVG GEEDEWEEVE EEVEEEEEEE EVEEEEQQQA
101: EEGDSDPASI QALLEVFPKE QLVELLRDAA VRHRDVLESV RRAADADPAQ RKIFVHGLGW DTTVDILTEA FRPYGEIEDL KLVSDRNTGK CKGYGFILFS
201: RLSGARAALL EPQKKIGNRT TSCQLASLGP VPPGGAANNP MLATAPAPAP AALILPPVSE YTQRKIFVSN VGADIDPQKL LQFFSKYGEI EEGPLGLDKA
301: TGKPKGFALF VYRTLESAKK ALQEPHKSFE GVMLHCQKAI DGPKPNKGGG YGATTTSGRK GAAGYGASSH SLPGSVGAGY GMASPASLAS MPGSVPGGPG
401: MNPALGQALT AFLATQGGGL GLNNILGVGP NSSGMPNSGS SGALGGGGVP GMPGSYMGGY GGGGGYGGPP GGPGRNYMGH
101: EEGDSDPASI QALLEVFPKE QLVELLRDAA VRHRDVLESV RRAADADPAQ RKIFVHGLGW DTTVDILTEA FRPYGEIEDL KLVSDRNTGK CKGYGFILFS
201: RLSGARAALL EPQKKIGNRT TSCQLASLGP VPPGGAANNP MLATAPAPAP AALILPPVSE YTQRKIFVSN VGADIDPQKL LQFFSKYGEI EEGPLGLDKA
301: TGKPKGFALF VYRTLESAKK ALQEPHKSFE GVMLHCQKAI DGPKPNKGGG YGATTTSGRK GAAGYGASSH SLPGSVGAGY GMASPASLAS MPGSVPGGPG
401: MNPALGQALT AFLATQGGGL GLNNILGVGP NSSGMPNSGS SGALGGGGVP GMPGSYMGGY GGGGGYGGPP GGPGRNYMGH
001: MTKKRKLESE SNETSEPTEK QQQQCEKEDP EIRNVDNQRD DDEQVVEQDT LKEMHEEEAK GEDNIEAETS SGSGNQGNED DDEEEPIEDL LEPFSKDQLL
101: ILLKEAAERH RDVANRIRIV ADEDLVHRKI FVHGLGWDTK ADSLIDAFKQ YGEIEDCKCV VDKVSGQSKG YGFILFKSRS GARNALKQPQ KKIGTRMTAC
201: QLASIGPVQG NPVVAPAQHF NPENVQRKIY VSNVSADIDP QKLLEFFSRF GEIEEGPLGL DKATGRPKGF ALFVYRSLES AKKALEEPHK TFEGHVLHCH
301: KANDGPKQVK QHQHNHNSHN QNSRYQRNDN NGYGAPGGHG HFIAGNNQAV QAFNPAIGQA LTALLASQGA GLGLNQAFGQ ALLGTLGTAS PGAVGGMPSG
401: YGTQANISPG VYPGYGAQAG YQGGYQTQQP GQGGAGRGQH GAGYGGPYMG R
101: ILLKEAAERH RDVANRIRIV ADEDLVHRKI FVHGLGWDTK ADSLIDAFKQ YGEIEDCKCV VDKVSGQSKG YGFILFKSRS GARNALKQPQ KKIGTRMTAC
201: QLASIGPVQG NPVVAPAQHF NPENVQRKIY VSNVSADIDP QKLLEFFSRF GEIEEGPLGL DKATGRPKGF ALFVYRSLES AKKALEEPHK TFEGHVLHCH
301: KANDGPKQVK QHQHNHNSHN QNSRYQRNDN NGYGAPGGHG HFIAGNNQAV QAFNPAIGQA LTALLASQGA GLGLNQAFGQ ALLGTLGTAS PGAVGGMPSG
401: YGTQANISPG VYPGYGAQAG YQGGYQTQQP GQGGAGRGQH GAGYGGPYMG R
Arabidopsis Description
UBA2BUBP1-associated protein 2B [Source:UniProtKB/Swiss-Prot;Acc:O80678]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.