Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G281300.1 | Wheat | nucleus | 97.43 | 96.06 |
| TraesCS7B01G178300.1 | Wheat | nucleus | 97.43 | 95.79 |
| HORVU7Hr1G060930.1 | Barley | plasma membrane | 94.0 | 92.94 |
| Zm00001d052820_P001 | Maize | extracellular, mitochondrion, plasma membrane | 71.71 | 65.54 |
| VIT_12s0057g01280.t01 | Wine grape | nucleus | 41.71 | 56.59 |
| VIT_19s0015g00920.t01 | Wine grape | nucleus | 56.0 | 56.32 |
| VIT_18s0117g00150.t01 | Wine grape | nucleus | 56.86 | 55.43 |
| OQU81002 | Sorghum | nucleus | 52.57 | 54.93 |
| AT3G13224.2 | Thale cress | nucleus | 53.14 | 51.96 |
| PGSC0003DMT400044868 | Potato | nucleus | 50.57 | 51.75 |
| Solyc07g045240.2.1 | Tomato | nucleus | 50.57 | 51.6 |
| KRH17717 | Soybean | nucleus | 51.43 | 51.14 |
| Bra039380.1-P | Field mustard | nucleus | 52.29 | 50.55 |
| CDY24201 | Canola | nucleus | 52.29 | 50.55 |
| CDY43360 | Canola | nucleus | 52.29 | 50.55 |
| TraesCS6A01G291100.1 | Wheat | nucleus | 46.57 | 47.8 |
| GSMUA_Achr9P12880_001 | Banana | cytosol | 31.14 | 47.39 |
| TraesCS6A01G187000.1 | Wheat | nucleus | 44.29 | 37.53 |
| Os08t0492100-02 | Rice | nucleus | 45.14 | 36.24 |
| TraesCS7A01G360900.1 | Wheat | nucleus | 41.14 | 35.91 |
| PGSC0003DMT400044866 | Potato | extracellular | 50.29 | 32.96 |
| Solyc12g035280.1.1 | Tomato | cytosol, nucleus, plastid | 29.71 | 28.03 |
| TraesCS4A01G150600.1 | Wheat | nucleus | 31.14 | 23.54 |
| TraesCS1A01G150600.1 | Wheat | nucleus | 30.29 | 23.35 |
| TraesCS2A01G267500.1 | Wheat | nucleus | 23.43 | 22.04 |
| TraesCS5A01G405300.1 | Wheat | nucleus | 20.57 | 20.06 |
| TraesCS3A01G485000.1 | Wheat | cytosol | 21.14 | 19.84 |
| TraesCS1A01G234200.1 | Wheat | cytosol | 20.0 | 19.18 |
| TraesCS2A01G190400.1 | Wheat | plastid | 28.57 | 18.83 |
| TraesCS3A01G389600.1 | Wheat | nucleus | 15.14 | 17.85 |
| TraesCS7A01G398200.1 | Wheat | cytosol, mitochondrion, nucleus | 13.14 | 16.25 |
| TraesCS3A01G220400.1 | Wheat | nucleus | 20.0 | 15.91 |
| TraesCS4A01G068100.1 | Wheat | nucleus | 10.86 | 15.26 |
| TraesCS3A01G499100.1 | Wheat | cytosol, nucleus, plastid | 13.14 | 14.74 |
| TraesCS3A01G181900.1 | Wheat | nucleus | 20.0 | 14.58 |
| TraesCS6A01G278300.3 | Wheat | plastid | 12.0 | 14.38 |
| TraesCS7A01G178700.2 | Wheat | nucleus | 11.43 | 13.16 |
| TraesCS4A01G106800.2 | Wheat | cytosol, mitochondrion, nucleus | 10.86 | 12.62 |
| TraesCS2A01G526400.1 | Wheat | nucleus | 15.43 | 10.61 |
| TraesCS6A01G318100.1 | Wheat | nucleus | 13.14 | 9.45 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G282600.1 | EnsemblPlantsGene:TraesCS7A01G282600 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR45276 |
| PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | MapMan:35.1 |
Description
No Description!
Coordinates
chr7A:+:310221888..310225121
Molecular Weight (calculated)
37959.1 Da
IEP (calculated)
8.509
GRAVY (calculated)
-0.708
Length
350 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKSEARPKG YGGSGSPGKI FVGGLPRDTT LATFQKHFGN YGEIVDSVIM KNKQTSQPRG FGFITYSDPA IVDKVMEDTH VINGKQVEIK RTIPKDYMQS
101: NPKDFRTKKI FVGGLPPILT EDNFKDFFEK YGAVVEHQIM HDHQTRRSRG FGFVVFESEE VVDDLLANGN MIDLAGSKVE IKKAEPKKSS NLPTSTGSDS
201: RSAYGRDSRD HPSGDDHGGL ADAYSSYNSG GFGPYRNHGG FVGGHGGVRH YHERYSHYYP GLGGYEGMSS FGYPSRFGPY GGGFDGPYAG GNLRGYRRGG
301: DESFGGPGSS SFDGAMYAGA YDPALGVYAP GGTPDMMNRG SFAPGRYHPY
101: NPKDFRTKKI FVGGLPPILT EDNFKDFFEK YGAVVEHQIM HDHQTRRSRG FGFVVFESEE VVDDLLANGN MIDLAGSKVE IKKAEPKKSS NLPTSTGSDS
201: RSAYGRDSRD HPSGDDHGGL ADAYSSYNSG GFGPYRNHGG FVGGHGGVRH YHERYSHYYP GLGGYEGMSS FGYPSRFGPY GGGFDGPYAG GNLRGYRRGG
301: DESFGGPGSS SFDGAMYAGA YDPALGVYAP GGTPDMMNRG SFAPGRYHPY
001: MGSRSRNDNF QSGDGASPGK IFIGGLHKDT TNTVFNKHFG KYGEITDSVI MRDRHTGQPR GFGFITFADP SVVDKVIEDT HVINGKQVEI KRTIPKGAGG
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV EIKKAEPKKS LNRSPPSYGS
201: HPRGRSSNDS YASYGGPYGG FDGGYGHPPG PIRSHGGPAS RYAGGYGYGR GSVGPEFGGG YNNYGGGSLG GYRNEPPLGY SSRFGPYGSG FGGEGYGRGG
301: EGAYLGYPRG GGEGYGGYGG PGYGGAYESG GPGGSYEGAG GPYGRGYSSS SRYHPYAR
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV EIKKAEPKKS LNRSPPSYGS
201: HPRGRSSNDS YASYGGPYGG FDGGYGHPPG PIRSHGGPAS RYAGGYGYGR GSVGPEFGGG YNNYGGGSLG GYRNEPPLGY SSRFGPYGSG FGGEGYGRGG
301: EGAYLGYPRG GGEGYGGYGG PGYGGAYESG GPGGSYEGAG GPYGRGYSSS SRYHPYAR
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LHL2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.