Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G173900.1 | Wheat | nucleus | 97.58 | 98.53 |
| TraesCS6B01G217500.1 | Wheat | nucleus | 98.06 | 97.83 |
| Os02t0221500-01 | Rice | nucleus | 85.23 | 88.67 |
| HORVU6Hr1G040220.5 | Barley | plastid | 97.58 | 86.85 |
| EES06526 | Sorghum | nucleus | 80.39 | 84.91 |
| Zm00001d016349_P002 | Maize | nucleus | 77.0 | 82.81 |
| TraesCS7A01G360900.1 | Wheat | nucleus | 70.94 | 73.07 |
| GSMUA_Achr7P13480_001 | Banana | nucleus | 52.78 | 64.69 |
| GSMUA_Achr10P... | Banana | nucleus | 50.61 | 62.76 |
| Zm00001d053572_P002 | Maize | cytosol | 77.72 | 58.47 |
| Solyc03g121710.2.1 | Tomato | nucleus | 34.62 | 53.16 |
| VIT_09s0002g02350.t01 | Wine grape | cytosol | 44.07 | 51.56 |
| PGSC0003DMT400006638 | Potato | nucleus | 45.04 | 48.19 |
| CDY26229 | Canola | nucleus | 41.89 | 46.63 |
| CDY48318 | Canola | nucleus | 41.89 | 46.51 |
| KRH23293 | Soybean | nucleus | 39.47 | 46.18 |
| AT1G17640.1 | Thale cress | nucleus | 40.92 | 45.8 |
| TraesCS7A01G282600.1 | Wheat | cytosol | 37.53 | 44.29 |
| TraesCS6A01G291100.1 | Wheat | nucleus | 34.62 | 41.94 |
| Solyc06g062740.1.1 | Tomato | cytosol | 19.61 | 41.12 |
| PGSC0003DMT400012372 | Potato | nucleus | 27.84 | 38.72 |
| PGSC0003DMT400012369 | Potato | nucleus | 35.11 | 33.18 |
| Solyc06g062730.1.1 | Tomato | nucleus | 29.06 | 32.7 |
| TraesCS1A01G150600.1 | Wheat | nucleus | 32.45 | 29.52 |
| TraesCS4A01G150600.1 | Wheat | nucleus | 29.78 | 26.57 |
| TraesCS1A01G234200.1 | Wheat | cytosol | 23.24 | 26.3 |
| TraesCS2A01G267500.1 | Wheat | nucleus | 22.76 | 25.27 |
| TraesCS3A01G485000.1 | Wheat | cytosol | 22.28 | 24.66 |
| TraesCS2A01G190400.1 | Wheat | plastid | 27.6 | 21.47 |
| TraesCS5A01G405300.1 | Wheat | nucleus | 18.64 | 21.45 |
| TraesCS3A01G389600.1 | Wheat | nucleus | 15.25 | 21.21 |
| TraesCS3A01G220400.1 | Wheat | nucleus | 22.52 | 21.14 |
| TraesCS7A01G398200.1 | Wheat | cytosol, mitochondrion, nucleus | 14.04 | 20.49 |
| TraesCS4A01G068100.1 | Wheat | nucleus | 12.35 | 20.48 |
| TraesCS6A01G278300.3 | Wheat | plastid | 14.04 | 19.86 |
| TraesCS3A01G499100.1 | Wheat | cytosol, nucleus, plastid | 14.29 | 18.91 |
| TraesCS3A01G181900.1 | Wheat | nucleus | 20.1 | 17.29 |
| TraesCS4A01G106800.2 | Wheat | cytosol, mitochondrion, nucleus | 12.59 | 17.28 |
| TraesCS7A01G178700.2 | Wheat | nucleus | 11.14 | 15.13 |
| TraesCS2A01G526400.1 | Wheat | nucleus | 18.64 | 15.13 |
| TraesCS6A01G318100.1 | Wheat | nucleus | 12.11 | 10.27 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G187000.1 | EnsemblPlantsGene:TraesCS6A01G187000 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR45276 |
| PFAM:PF00076 | PFscan:PS50102 | PRINTS:PR01228 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6A:-:222695924..222700902
Molecular Weight (calculated)
41320.6 Da
IEP (calculated)
6.244
GRAVY (calculated)
-0.701
Length
413 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGYPEDNQH AMNGYEDEVE EVEEVDEEGR PGRRGRRDGG DGGGYGDAGG DDGRAGGGDS SGKIFVGGVA WETTEESFSK HFGKYGAITD SVIMKDKHTK
101: MPRGFGFVTF SDPSVIDKVL EDEHNIDGRT VEVKRTVPRE EMSSKDGPKT RKIFVGGLPS TLTEDDLRDH FSSYGNVVEH QIMVDHSTGR SRGFGFVTFE
201: SEDSVERVIS EGRMRDLGGK QVEIKKAEPK KHGGDHSSNG RSSHSGGGGY RSSYRSGGAA ASGGSSSGGG GGGGYGYGAG HRSAAAGSYY DSTGYGYGRG
301: GYGAAAAAAA YGGNAGYGSG FGGGYGGSMY GGAYGAYGAY GGGAYGVGAY GGGAYGAGAY GGGAYGGGAP GGYGAGGYGS YGGAGAGAGA GGAAGGGGSA
401: GGRGSSRYHP YGK
101: MPRGFGFVTF SDPSVIDKVL EDEHNIDGRT VEVKRTVPRE EMSSKDGPKT RKIFVGGLPS TLTEDDLRDH FSSYGNVVEH QIMVDHSTGR SRGFGFVTFE
201: SEDSVERVIS EGRMRDLGGK QVEIKKAEPK KHGGDHSSNG RSSHSGGGGY RSSYRSGGAA ASGGSSSGGG GGGGYGYGAG HRSAAAGSYY DSTGYGYGRG
301: GYGAAAAAAA YGGNAGYGSG FGGGYGGSMY GGAYGAYGAY GGGAYGVGAY GGGAYGAGAY GGGAYGGGAP GGYGAGGYGS YGGAGAGAGA GGAAGGGGSA
401: GGRGSSRYHP YGK
001: MDYNSDRGYD DSYHHHVHDE QLPQSDFEVE TFDDRRNGGA AVDTGGIQMK HSVDHRHSSS SMSSPGKLFV GGVSWETTAE TFANYFGKFG EVVDSVIMTD
101: RITGNPRGFG FVTFADSAVA EKVLEEDHVI DDRKVDLKRT LPRGDKDTDI KAVSKTRKIF VGGLPPLLEE DELKNYFCVY GDIIEHQIMY DHHTGRSRGF
201: GFVTFQTEDS VDRLFSDGKV HELGDKQVEI KRAEPKRTGR DNSFRSYGAS GKYDQEDSYS GKANEDYSMY SGYGGYGGYG AYAGNSMVNP AGFYGYGGGY
301: GYGYGYGGQM FNMGYGAGGY SHMGSGYGVA AAAAYGGGKS HGNGNNGSSS GKGNGTNGSG PDRYHPYQK
101: RITGNPRGFG FVTFADSAVA EKVLEEDHVI DDRKVDLKRT LPRGDKDTDI KAVSKTRKIF VGGLPPLLEE DELKNYFCVY GDIIEHQIMY DHHTGRSRGF
201: GFVTFQTEDS VDRLFSDGKV HELGDKQVEI KRAEPKRTGR DNSFRSYGAS GKYDQEDSYS GKANEDYSMY SGYGGYGGYG AYAGNSMVNP AGFYGYGGGY
301: GYGYGYGGQM FNMGYGAGGY SHMGSGYGVA AAAAYGGGKS HGNGNNGSSS GKGNGTNGSG PDRYHPYQK
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I906]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.