Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G197500.2 | Wheat | cytosol, mitochondrion, nucleus | 96.01 | 96.66 |
| TraesCS4D01G198000.3 | Wheat | cytosol | 95.68 | 90.28 |
| HORVU4Hr1G057110.23 | Barley | nucleus | 92.03 | 89.35 |
| Os03t0286500-01 | Rice | cytosol, nucleus, plastid | 87.38 | 84.84 |
| EER95048 | Sorghum | cytosol, nucleus, plastid | 85.38 | 82.9 |
| Zm00001d028714_P001 | Maize | cytosol, nucleus, plasma membrane | 81.06 | 82.15 |
| Zm00001d047753_P001 | Maize | cytosol, mitochondrion, nucleus | 72.43 | 78.14 |
| VIT_13s0019g03610.t01 | Wine grape | nucleus | 50.5 | 61.54 |
| Solyc04g049920.2.1 | Tomato | nucleus | 46.18 | 57.68 |
| PGSC0003DMT400027411 | Potato | nucleus | 48.17 | 57.09 |
| GSMUA_Achr3P13820_001 | Banana | cytosol | 49.83 | 53.76 |
| GSMUA_Achr11P... | Banana | nucleus | 42.86 | 48.68 |
| KRH06306 | Soybean | nucleus | 40.53 | 45.35 |
| KRH47731 | Soybean | nucleus | 39.87 | 44.94 |
| CDX73451 | Canola | cytosol | 35.22 | 42.4 |
| CDY02889 | Canola | nucleus | 30.56 | 42.4 |
| AT3G54770.1 | Thale cress | nucleus | 35.88 | 41.38 |
| CDX78261 | Canola | nucleus | 35.55 | 41.31 |
| Bra007096.1-P | Field mustard | nucleus | 35.22 | 40.93 |
| CDY64698 | Canola | nucleus | 34.88 | 40.23 |
| TraesCS4A01G068100.1 | Wheat | nucleus | 29.24 | 35.34 |
| TraesCS7A01G398200.1 | Wheat | cytosol, mitochondrion, nucleus | 31.56 | 33.57 |
| TraesCS3A01G389600.1 | Wheat | nucleus | 32.89 | 33.33 |
| TraesCS3A01G499100.1 | Wheat | cytosol, nucleus, plastid | 33.22 | 32.05 |
| TraesCS6A01G278300.3 | Wheat | plastid | 30.56 | 31.51 |
| TraesCS7A01G178700.2 | Wheat | nucleus | 30.9 | 30.59 |
| TraesCS6A01G318100.1 | Wheat | nucleus | 27.91 | 17.25 |
| TraesCS3A01G220400.1 | Wheat | nucleus | 19.6 | 13.41 |
| TraesCS7A01G360900.1 | Wheat | nucleus | 16.94 | 12.72 |
| TraesCS6A01G187000.1 | Wheat | nucleus | 17.28 | 12.59 |
| TraesCS6A01G291100.1 | Wheat | nucleus | 13.62 | 12.02 |
| TraesCS4A01G150600.1 | Wheat | nucleus | 17.28 | 11.23 |
| TraesCS7A01G282600.1 | Wheat | cytosol | 12.62 | 10.86 |
| TraesCS2A01G267500.1 | Wheat | nucleus | 13.29 | 10.75 |
| TraesCS3A01G485000.1 | Wheat | cytosol | 12.96 | 10.46 |
| TraesCS1A01G234200.1 | Wheat | cytosol | 12.62 | 10.41 |
| TraesCS1A01G150600.1 | Wheat | nucleus | 15.61 | 10.35 |
| TraesCS3A01G181900.1 | Wheat | nucleus | 15.95 | 10.0 |
| TraesCS2A01G190400.1 | Wheat | plastid | 17.61 | 9.98 |
| TraesCS2A01G526400.1 | Wheat | nucleus | 16.28 | 9.63 |
| TraesCS5A01G405300.1 | Wheat | nucleus | 9.63 | 8.08 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G106800.2 | EnsemblPlantsGene:TraesCS4A01G106800 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR44374 |
| PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | TIGR:cd12384 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4A:-:121504169..121506157
Molecular Weight (calculated)
31931.0 Da
IEP (calculated)
9.290
GRAVY (calculated)
-0.314
Length
301 amino acids
Sequence
(BLAST)
(BLAST)
001: MTMLGQAQAQ PAAAFGDTTL TKVFVGGLAW ETHKDTLREH FERFGDILEA VIISDKLTGR SKGYGFVTFK EADAAKKACE DGTPVINGRR ANCNLASLGA
101: KPRPQPPHLL RPSPPTTPAP HHMPALPSPH HQPAPAIAVG SRGVSPVPWY YHPSTTPPPP PQAAHYGHGA HQQYHGVLPF YPATANYGYS PNYVTDLSYN
201: AQKLGQAAAA APGAGGSYMQ PQGHFSYPAA AAQGGMLAPN GMMPVYPYYH YHHYHHGSQG LGVPAARFFP PVSAAVPTVP AIISKPTVMV PPKVEQVAGC
301: S
101: KPRPQPPHLL RPSPPTTPAP HHMPALPSPH HQPAPAIAVG SRGVSPVPWY YHPSTTPPPP PQAAHYGHGA HQQYHGVLPF YPATANYGYS PNYVTDLSYN
201: AQKLGQAAAA APGAGGSYMQ PQGHFSYPAA AAQGGMLAPN GMMPVYPYYH YHHYHHGSQG LGVPAARFFP PVSAAVPTVP AIISKPTVMV PPKVEQVAGC
301: S
001: MTTSNNVNGC FGDTKLTKVF VGGLAWDTHK EAMYDHFIKY GDILEAVIIS DKLTRRSKGY GFVTFKDAKA ATRACEDSTP IINGRRANCN LASLGGRLRK
101: SPTMTSPQQG PKNGNRATPP HVGNHSQWYY PSGFTNQQHQ QQNHQAVPFY GYPSAYVAPN MTFNQKVGYV GGTYMNGYYA QMQPQPQSQP QPQYYHHHMY
201: GGGRVMVGAA SPMVPFYTVY PYHQSQAIGF PQPSFSKPLS FSTPPISGTV GGESIQKKAI H
101: SPTMTSPQQG PKNGNRATPP HVGNHSQWYY PSGFTNQQHQ QQNHQAVPFY GYPSAYVAPN MTFNQKVGYV GGTYMNGYYA QMQPQPQSQP QPQYYHHHMY
201: GGGRVMVGAA SPMVPFYTVY PYHQSQAIGF PQPSFSKPLS FSTPPISGTV GGESIQKKAI H
Arabidopsis Description
ARP1Probable RNA-binding protein ARP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1S3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.