Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G258200.1 | |
| TraesCS1B01G268700.1 | |
| TraesCS1D01G257500.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G33470.1 | TraesCS1A01G258200.1 | AT3G56680.1 | 21798944 |
| AT1G33470.1 | TraesCS1B01G268700.1 | AT3G56680.1 | 21798944 |
| AT1G33470.1 | TraesCS1D01G257500.2 | AT3G56680.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G419200.1 | Wheat | nucleus | 99.33 | 99.66 |
| TraesCS3D01G380100.1 | Wheat | nucleus | 98.99 | 99.32 |
| Zm00001d042641_P001 | Maize | nucleus | 90.57 | 91.19 |
| Os01t0876800-00 | Rice | nucleus | 91.58 | 90.67 |
| EES01849 | Sorghum | nucleus | 78.79 | 89.31 |
| KRH75298 | Soybean | cytosol, nucleus | 26.94 | 80.81 |
| KRH13261 | Soybean | cytosol | 32.66 | 78.23 |
| Zm00001d012238_P003 | Maize | nucleus, plasma membrane, plastid | 82.49 | 72.06 |
| GSMUA_Achr10P... | Banana | nucleus | 63.3 | 69.37 |
| KRH40033 | Soybean | nucleus | 62.29 | 68.01 |
| VIT_18s0089g00920.t01 | Wine grape | nucleus | 60.94 | 67.29 |
| KRH23771 | Soybean | nucleus | 61.62 | 67.28 |
| GSMUA_Achr6P17510_001 | Banana | cytosol, mitochondrion, nucleus | 60.61 | 66.67 |
| GSMUA_Achr3P21850_001 | Banana | nucleus | 58.25 | 66.03 |
| PGSC0003DMT400008944 | Potato | nucleus | 57.58 | 64.77 |
| GSMUA_Achr8P08440_001 | Banana | nucleus | 56.23 | 64.48 |
| Solyc11g044470.1.1 | Tomato | mitochondrion, nucleus, plastid | 55.22 | 62.84 |
| CDY69197 | Canola | nucleus | 38.05 | 50.22 |
| Bra024547.1-P | Field mustard | nucleus | 39.06 | 48.54 |
| CDY04769 | Canola | nucleus | 38.38 | 48.1 |
| CDX73279 | Canola | cytosol | 38.05 | 46.69 |
| AT1G33470.1 | Thale cress | cytosol | 38.05 | 46.12 |
| Bra012350.1-P | Field mustard | nucleus | 37.71 | 44.98 |
| KRH62942 | Soybean | mitochondrion | 30.64 | 44.61 |
| CDY25759 | Canola | nucleus | 37.37 | 44.58 |
| TraesCS4A01G068100.1 | Wheat | nucleus | 34.01 | 40.56 |
| TraesCS7A01G398200.1 | Wheat | cytosol, mitochondrion, nucleus | 38.38 | 40.28 |
| TraesCS3A01G499100.1 | Wheat | cytosol, nucleus, plastid | 40.4 | 38.46 |
| Bra010203.1-P | Field mustard | nucleus | 38.38 | 37.38 |
| AT1G22910.3 | Thale cress | nucleus | 42.09 | 36.02 |
| CDY67263 | Canola | nucleus | 38.72 | 35.06 |
| TraesCS6A01G278300.3 | Wheat | plastid | 34.34 | 34.93 |
| TraesCS4A01G106800.2 | Wheat | cytosol, mitochondrion, nucleus | 33.33 | 32.89 |
| TraesCS7A01G178700.2 | Wheat | nucleus | 30.64 | 29.93 |
| CDY13339 | Canola | mitochondrion | 15.82 | 27.98 |
| CDY21399 | Canola | mitochondrion | 13.13 | 26.9 |
| GSMUA_Achr6P24180_001 | Banana | cytosol | 54.88 | 24.44 |
| TraesCS6A01G318100.1 | Wheat | nucleus | 29.63 | 18.07 |
| TraesCS7A01G360900.1 | Wheat | nucleus | 21.21 | 15.71 |
| TraesCS6A01G187000.1 | Wheat | nucleus | 21.21 | 15.25 |
| TraesCS6A01G291100.1 | Wheat | nucleus | 17.51 | 15.25 |
| TraesCS7A01G282600.1 | Wheat | cytosol | 17.85 | 15.14 |
| TraesCS3A01G220400.1 | Wheat | nucleus | 21.21 | 14.32 |
| TraesCS1A01G150600.1 | Wheat | nucleus | 20.2 | 13.22 |
| TraesCS4A01G150600.1 | Wheat | nucleus | 20.2 | 12.96 |
| TraesCS1A01G234200.1 | Wheat | cytosol | 15.15 | 12.33 |
| TraesCS3A01G485000.1 | Wheat | cytosol | 15.15 | 12.06 |
| TraesCS2A01G267500.1 | Wheat | nucleus | 14.48 | 11.56 |
| TraesCS5A01G405300.1 | Wheat | nucleus | 13.8 | 11.42 |
| TraesCS2A01G190400.1 | Wheat | plastid | 19.53 | 10.92 |
| TraesCS3A01G181900.1 | Wheat | nucleus | 16.84 | 10.42 |
| TraesCS2A01G526400.1 | Wheat | nucleus | 17.51 | 10.22 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G389600.1 | EnsemblPlantsGene:TraesCS3A01G389600 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR44374 |
| PANTHER:PTHR44374:SF1 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| TIGR:cd12384 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr3A:-:638068179..638074769
Molecular Weight (calculated)
31769.3 Da
IEP (calculated)
9.028
GRAVY (calculated)
-0.288
Length
297 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPPSVMGQF GDTTYTKVFV GGLAWETQKE TMRKYFEQFG EILEAVVITD KNTGRSKGYG FVTFRDPESA MRSCVDPAPV IDGRRANCNL ASLGVQRSRP
101: PTPQHGGARS FRVMKSFGQQ QAAAGIQGAL GAAFPSQATF PHYAIPQGLP YHVYGYSPYS PDYGYPANYY NIYGGNQYPF YGGAGTGMVT GTSPFYPYFQ
201: FGQSGSTTPN YATGQGYNMQ FPQMFPFSTV ASTAAAVTGF AQQYGGPLSL AASPQAQAGM TMALTAPTLP SPTQAAHPYR LVPSHFAVSA APEQSLA
101: PTPQHGGARS FRVMKSFGQQ QAAAGIQGAL GAAFPSQATF PHYAIPQGLP YHVYGYSPYS PDYGYPANYY NIYGGNQYPF YGGAGTGMVT GTSPFYPYFQ
201: FGQSGSTTPN YATGQGYNMQ FPQMFPFSTV ASTAAAVTGF AQQYGGPLSL AASPQAQAGM TMALTAPTLP SPTQAAHPYR LVPSHFAVSA APEQSLA
001: MEDTTFTKVF VGGLAWETHK VSLRNYFEQF GDIVEAVVIT DKSSGRSKGY GFVTFCDPEA AQKACVDPAP VIDGRRANCN LAAFGVQRSK PSSPIHGHVG
101: GRGMKVTSPF KTHFGTAATA IPSPLPFSHY TLPYTNPFGF SSYSMDYNYP TQSYYNVYGG ATAQHPMYGS GPMTGVAAAP AAGFYPYLQF AEGNGPVTGY
201: APLHYPNHMF HYSAPGGNYP HHNGSPVSLA PSPVIPSVPQ A
101: GRGMKVTSPF KTHFGTAATA IPSPLPFSHY TLPYTNPFGF SSYSMDYNYP TQSYYNVYGG ATAQHPMYGS GPMTGVAAAP AAGFYPYLQF AEGNGPVTGY
201: APLHYPNHMF HYSAPGGNYP HHNGSPVSLA PSPVIPSVPQ A
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q67YS0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.