Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 5
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX73279 | Canola | cytosol | 89.29 | 61.98 |
| CDY21399 | Canola | mitochondrion | 21.43 | 24.83 |
| KRH23771 | Soybean | nucleus | 35.12 | 21.69 |
| VIT_18s0089g00920.t01 | Wine grape | nucleus | 33.93 | 21.19 |
| KRH40033 | Soybean | nucleus | 33.93 | 20.96 |
| Solyc11g044470.1.1 | Tomato | mitochondrion, nucleus, plastid | 29.76 | 19.16 |
| GSMUA_Achr3P21850_001 | Banana | nucleus | 29.76 | 19.08 |
| PGSC0003DMT400008944 | Potato | nucleus | 29.76 | 18.94 |
| GSMUA_Achr10P... | Banana | nucleus | 30.36 | 18.82 |
| GSMUA_Achr8P08440_001 | Banana | nucleus | 28.57 | 18.53 |
| GSMUA_Achr6P17510_001 | Banana | cytosol, mitochondrion, nucleus | 29.76 | 18.52 |
| CDY04769 | Canola | nucleus | 24.4 | 17.3 |
| EES01849 | Sorghum | nucleus | 26.79 | 17.18 |
| Os01t0876800-00 | Rice | nucleus | 29.76 | 16.67 |
| CDY41556 | Canola | nucleus | 27.98 | 16.21 |
| CDY25759 | Canola | nucleus | 23.81 | 16.06 |
| CDY31508 | Canola | nucleus | 23.81 | 16.0 |
| CDY69197 | Canola | nucleus | 21.43 | 16.0 |
| Zm00001d042641_P001 | Maize | nucleus | 27.98 | 15.93 |
| TraesCS3B01G419200.1 | Wheat | nucleus | 27.98 | 15.88 |
| TraesCS3D01G380100.1 | Wheat | nucleus | 27.98 | 15.88 |
| TraesCS3A01G389600.1 | Wheat | nucleus | 27.98 | 15.82 |
| CDX80046 | Canola | nucleus | 28.57 | 15.19 |
| Os01t0958500-01 | Rice | nucleus | 27.98 | 15.16 |
| CDY33653 | Canola | nucleus | 22.62 | 15.02 |
| CDY01349 | Canola | nucleus | 21.43 | 14.94 |
| CDY31859 | Canola | nucleus | 21.43 | 14.94 |
| HORVU3Hr1G110370.1 | Barley | cytosol, mitochondrion, nucleus | 26.79 | 14.38 |
| CDX88283 | Canola | nucleus | 23.81 | 14.29 |
| CDX96615 | Canola | nucleus | 21.43 | 14.29 |
| CDY41557 | Canola | nucleus | 26.79 | 14.24 |
| TraesCS3D01G505900.1 | Wheat | mitochondrion | 26.79 | 14.24 |
| CDY29496 | Canola | nucleus | 22.02 | 14.18 |
| CDY48016 | Canola | nucleus | 27.38 | 14.11 |
| TraesCS3B01G562300.3 | Wheat | mitochondrion | 26.19 | 14.1 |
| CDY27523 | Canola | nucleus | 26.79 | 13.93 |
| Zm00001d012238_P003 | Maize | nucleus, plasma membrane, plastid | 27.98 | 13.82 |
| TraesCS3A01G499100.1 | Wheat | cytosol, nucleus, plastid | 25.6 | 13.78 |
| EES02078 | Sorghum | nucleus | 26.79 | 13.31 |
| CDX87594 | Canola | nucleus | 24.4 | 12.81 |
| CDY67263 | Canola | nucleus | 23.81 | 12.2 |
| AT1G22910.3 | Thale cress | nucleus | 25.0 | 12.1 |
| Zm00001d042042_P001 | Maize | nucleus | 23.81 | 11.76 |
| CDX73451 | Canola | cytosol | 17.26 | 11.6 |
| CDY64698 | Canola | nucleus | 16.67 | 10.73 |
| CDX68024 | Canola | nucleus | 17.86 | 10.6 |
| CDX87460 | Canola | nucleus | 17.86 | 10.53 |
| CDX78261 | Canola | nucleus | 16.07 | 10.42 |
| CDY21356 | Canola | nucleus | 17.26 | 10.0 |
| CDX88432 | Canola | nucleus | 16.67 | 9.86 |
| CDY46642 | Canola | nucleus | 16.07 | 9.34 |
| CDY02889 | Canola | nucleus | 11.9 | 9.22 |
| CDX79253 | Canola | nucleus | 14.88 | 8.93 |
| KRH13261 | Soybean | cytosol | 6.55 | 8.87 |
| CDY00446 | Canola | nucleus | 15.48 | 7.65 |
| CDY42724 | Canola | cytosol | 14.88 | 6.6 |
| CDY69852 | Canola | cytosol | 14.88 | 6.54 |
| CDY37724 | Canola | nucleus | 12.5 | 6.5 |
| CDY12068 | Canola | nucleus | 13.69 | 6.42 |
| KRH62942 | Soybean | mitochondrion | 7.74 | 6.37 |
| CDY23739 | Canola | nucleus | 14.29 | 6.27 |
| CDY26229 | Canola | nucleus | 13.69 | 6.2 |
| CDY48318 | Canola | nucleus | 13.69 | 6.18 |
| CDX79527 | Canola | nucleus | 14.88 | 6.16 |
| CDX84689 | Canola | nucleus | 14.88 | 6.13 |
| CDX90262 | Canola | nucleus | 13.69 | 6.02 |
| CDY24201 | Canola | nucleus | 12.5 | 5.8 |
| CDY43360 | Canola | nucleus | 12.5 | 5.8 |
| CDY67299 | Canola | nucleus | 13.1 | 5.77 |
| GSMUA_Achr6P24180_001 | Banana | cytosol | 21.43 | 5.4 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 3.57 | 5.36 |
| CDY17173 | Canola | nucleus | 11.9 | 5.31 |
| CDY08023 | Canola | nucleus | 11.31 | 5.28 |
| CDX77783 | Canola | nucleus | 13.1 | 5.18 |
| CDY26001 | Canola | nucleus | 12.5 | 5.16 |
| CDY41059 | Canola | nucleus | 13.1 | 5.15 |
| CDY24106 | Canola | nucleus | 12.5 | 5.08 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 12.5 | 5.06 |
| KRH75298 | Soybean | cytosol, nucleus | 2.98 | 5.05 |
| CDY55846 | Canola | nucleus | 11.9 | 4.99 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 10.12 | 4.91 |
| CDY07975 | Canola | nucleus | 13.69 | 4.88 |
| CDX74030 | Canola | nucleus | 13.69 | 4.87 |
| CDX69277 | Canola | mitochondrion | 5.36 | 4.84 |
| CDY50131 | Canola | nucleus | 10.71 | 4.71 |
| CDY25867 | Canola | nucleus | 11.31 | 4.69 |
| CDY51790 | Canola | cytosol | 2.98 | 4.67 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 11.31 | 4.62 |
| CDY28918 | Canola | mitochondrion | 13.1 | 4.55 |
| CDY22136 | Canola | nucleus | 13.1 | 4.53 |
| CDX74070 | Canola | cytosol | 9.52 | 4.44 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 9.52 | 4.41 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 9.52 | 4.41 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 9.52 | 4.4 |
| CDY36753 | Canola | nucleus | 11.31 | 4.37 |
| CDY35966 | Canola | nucleus | 12.5 | 4.25 |
| CDX69279 | Canola | nucleus | 5.95 | 4.24 |
| CDY46690 | Canola | nucleus | 10.71 | 4.21 |
| CDY66272 | Canola | nucleus | 11.9 | 4.09 |
| CDY36357 | Canola | nucleus | 13.1 | 4.06 |
| CDY42577 | Canola | nucleus | 13.1 | 4.04 |
| CDY25957 | Canola | nucleus | 13.1 | 3.98 |
| CDY06947 | Canola | nucleus | 10.12 | 3.95 |
| CDY11989 | Canola | nucleus | 10.12 | 3.94 |
| CDY46689 | Canola | nucleus | 10.71 | 3.89 |
| CDY57580 | Canola | nucleus | 10.12 | 3.84 |
| CDY27186 | Canola | nucleus | 10.12 | 3.79 |
| CDX92807 | Canola | nucleus | 10.12 | 3.78 |
| CDX72106 | Canola | nucleus | 10.12 | 3.74 |
| CDX94301 | Canola | nucleus | 9.52 | 3.62 |
| CDX89316 | Canola | endoplasmic reticulum | 9.52 | 3.58 |
| CDY40554 | Canola | nucleus | 13.1 | 3.35 |
| CDX76015 | Canola | nucleus | 5.95 | 3.28 |
| CDY05301 | Canola | nucleus | 6.55 | 3.13 |
| CDX75170 | Canola | extracellular | 2.98 | 3.07 |
| CDY24657 | Canola | nucleus | 5.95 | 2.94 |
| CDY47382 | Canola | golgi, plastid | 7.14 | 2.88 |
| CDY13782 | Canola | nucleus | 4.76 | 2.61 |
| CDX76950 | Canola | nucleus | 4.76 | 2.6 |
| CDY15850 | Canola | nucleus | 5.36 | 2.43 |
Protein Annotations
| EnsemblPlants:CDY13339 | EnsemblPlantsGene:GSBRNA2T00071339001 | PANTHER:PTHR44374 | PANTHER:PTHR44374:SF1 | ProteinID:CDY13339 | ProteinID:CDY13339.1 |
| SEG:seg | UniParc:UPI0004EEF784 | UniProt:A0A078FK42 | MapMan:35.2 | : | : |
Description
BnaC06g14180DBnaC06g14180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FK42]
Coordinates
chrLK032034:-:437698..439552
Molecular Weight (calculated)
18000.2 Da
IEP (calculated)
8.874
GRAVY (calculated)
-0.118
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MFLFLHKANV REGRSHGVVC LAGHVGGGRG VKVTSPFKTH FGTAAALPSP IPFSHYTLPY TNPYGFSSYS MDYNYPTSYY NVYGGATAQH PMYSTGPMTG
101: IAAAAAAYYP YLQFAEGNGP VTGYAPLHYP NHMFHYSTGG NYPHHNASPV SLAPSPVIPS VCFAVPQA
101: IAAAAAAYYP YLQFAEGNGP VTGYAPLHYP NHMFHYSTGG NYPHHNASPV SLAPSPVIPS VCFAVPQA
001: MEDTTFTKVF VGGLAWETHK VSLRNYFEQF GDIVEAVVIT DKSSGRSKGY GFVTFCDPEA AQKACVDPAP VIDGRRANCN LAAFGVQRSK PSSPIHGHVG
101: GRGMKVTSPF KTHFGTAATA IPSPLPFSHY TLPYTNPFGF SSYSMDYNYP TSYYNVYGGA TAQHPMYGSG PMTGVAAAPA AGFYPYLQFA EGNGPVTGYA
201: PLHYPNHMFH YSAPGGNYPH HNGSPVSLAP SPVIPSVCFA VPQA
101: GRGMKVTSPF KTHFGTAATA IPSPLPFSHY TLPYTNPFGF SSYSMDYNYP TSYYNVYGGA TAQHPMYGSG PMTGVAAAPA AGFYPYLQFA EGNGPVTGYA
201: PLHYPNHMFH YSAPGGNYPH HNGSPVSLAP SPVIPSVCFA VPQA
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q67YS0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.