Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 7
- vacuole 5
- plasma membrane 5
- golgi 5
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026413.1-P | Field mustard | nucleus | 85.46 | 90.31 |
| CDX94301 | Canola | nucleus | 89.04 | 90.05 |
| CDX92807 | Canola | nucleus | 80.54 | 80.0 |
| AT4G26650.1 | Thale cress | nucleus | 80.98 | 79.56 |
| CDY46689 | Canola | nucleus | 80.76 | 77.97 |
| CDY46690 | Canola | nucleus | 72.26 | 75.47 |
| CDY11989 | Canola | nucleus | 67.56 | 69.91 |
| CDY36753 | Canola | nucleus | 66.22 | 68.05 |
| KRH14284 | Soybean | nucleus | 55.26 | 51.67 |
| KRH73860 | Soybean | nucleus | 54.81 | 51.36 |
| VIT_19s0090g01660.t01 | Wine grape | nucleus | 54.81 | 51.26 |
| KRG98573 | Soybean | nucleus | 54.59 | 50.94 |
| KRH46297 | Soybean | nucleus | 54.59 | 50.94 |
| PGSC0003DMT400037271 | Potato | nucleus | 52.57 | 50.0 |
| PGSC0003DMT400076643 | Potato | nucleus | 52.57 | 49.58 |
| GSMUA_Achr10P... | Banana | nucleus | 50.78 | 49.35 |
| GSMUA_Achr10P... | Banana | nucleus | 48.55 | 49.32 |
| Solyc10g006050.2.1 | Tomato | nucleus | 46.76 | 48.27 |
| Solyc12g014600.1.1 | Tomato | nucleus | 46.53 | 47.6 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 52.35 | 46.8 |
| Os11t0637700-01 | Rice | plasma membrane | 47.65 | 45.61 |
| Zm00001d019079_P001 | Maize | cytosol | 45.64 | 45.54 |
| HORVU0Hr1G008280.1 | Barley | nucleus | 46.98 | 45.36 |
| TraesCS4A01G150600.1 | Wheat | nucleus | 46.98 | 45.36 |
| TraesCS4D01G152200.1 | Wheat | nucleus | 46.98 | 45.36 |
| CDY07975 | Canola | nucleus | 47.65 | 45.22 |
| Zm00001d007772_P001 | Maize | nucleus | 45.41 | 45.21 |
| TraesCSU01G068500.1 | Wheat | nucleus | 46.76 | 45.14 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 44.52 | 45.02 |
| CDX74030 | Canola | nucleus | 47.43 | 44.92 |
| EER98147 | Sorghum | nucleus | 44.97 | 44.37 |
| Zm00001d019084_P002 | Maize | nucleus | 44.97 | 44.27 |
| EER96020 | Sorghum | nucleus | 44.97 | 44.18 |
| EER97452 | Sorghum | nucleus | 46.53 | 44.16 |
| Os07t0584500-01 | Rice | nucleus | 46.53 | 44.07 |
| CDY22136 | Canola | nucleus | 47.87 | 44.03 |
| CDY41059 | Canola | nucleus | 42.06 | 44.03 |
| CDY66272 | Canola | nucleus | 48.1 | 43.97 |
| TraesCS2B01G216600.2 | Wheat | cytosol | 46.09 | 43.74 |
| CDY35966 | Canola | nucleus | 48.32 | 43.72 |
| TraesCS2D01G197500.2 | Wheat | nucleus | 45.86 | 43.62 |
| CDY50131 | Canola | nucleus | 36.47 | 42.67 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 39.6 | 42.65 |
| Zm00001d006704_P002 | Maize | nucleus | 45.86 | 42.36 |
| CDX77783 | Canola | nucleus | 39.15 | 41.18 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 36.69 | 39.9 |
| TraesCS2A01G190400.1 | Wheat | plastid | 45.86 | 38.61 |
| CDY23739 | Canola | nucleus | 32.66 | 38.12 |
| CDY67299 | Canola | nucleus | 32.44 | 38.06 |
| CDY17173 | Canola | nucleus | 31.99 | 37.93 |
| CDY28918 | Canola | mitochondrion | 40.72 | 37.6 |
| Zm00001d019086_P001 | Maize | nucleus | 44.74 | 37.59 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 45.41 | 37.52 |
| CDY12068 | Canola | nucleus | 29.08 | 36.31 |
| CDX75170 | Canola | extracellular | 12.98 | 35.58 |
| OQU83904 | Sorghum | nucleus | 35.79 | 35.56 |
| CDX84689 | Canola | nucleus | 32.44 | 35.54 |
| CDX79527 | Canola | nucleus | 32.21 | 35.47 |
| CDY37724 | Canola | nucleus | 25.5 | 35.29 |
| CDX90262 | Canola | nucleus | 29.75 | 34.82 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 51.23 | 33.73 |
| CDY25957 | Canola | nucleus | 41.61 | 33.63 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 7.61 | 30.36 |
| CDY51790 | Canola | cytosol | 7.16 | 29.91 |
| CDY26229 | Canola | nucleus | 24.61 | 29.65 |
| CDY48318 | Canola | nucleus | 24.38 | 29.3 |
| CDY24201 | Canola | nucleus | 23.27 | 28.73 |
| CDY43360 | Canola | nucleus | 23.27 | 28.73 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 22.15 | 28.61 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 22.82 | 28.02 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 22.6 | 27.82 |
| CDY40554 | Canola | nucleus | 40.27 | 27.44 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 21.92 | 27.0 |
| CDY42724 | Canola | cytosol | 19.24 | 22.69 |
| CDY69852 | Canola | cytosol | 19.24 | 22.51 |
| CDX69279 | Canola | nucleus | 11.63 | 22.03 |
| CDY42577 | Canola | nucleus | 25.06 | 20.55 |
| CDY36357 | Canola | nucleus | 24.83 | 20.48 |
| CDY69197 | Canola | nucleus | 9.62 | 19.11 |
| CDX73279 | Canola | cytosol | 10.07 | 18.59 |
| CDY04769 | Canola | nucleus | 9.84 | 18.57 |
| CDY02889 | Canola | nucleus | 8.72 | 17.97 |
| CDY31508 | Canola | nucleus | 9.84 | 17.6 |
| CDY31859 | Canola | nucleus | 9.17 | 17.01 |
| CDX73451 | Canola | cytosol | 9.4 | 16.8 |
| CDY55846 | Canola | nucleus | 14.99 | 16.71 |
| CDX96615 | Canola | nucleus | 9.4 | 16.67 |
| CDY29496 | Canola | nucleus | 9.62 | 16.48 |
| CDX78261 | Canola | nucleus | 9.4 | 16.22 |
| CDY41556 | Canola | nucleus | 10.51 | 16.21 |
| CDY33653 | Canola | nucleus | 9.17 | 16.21 |
| CDY01349 | Canola | nucleus | 8.72 | 16.18 |
| CDY25759 | Canola | nucleus | 8.95 | 16.06 |
| CDY25867 | Canola | nucleus | 14.54 | 16.05 |
| CDY24106 | Canola | nucleus | 14.77 | 15.98 |
| CDY26001 | Canola | nucleus | 14.54 | 15.97 |
| CDX88283 | Canola | nucleus | 9.84 | 15.71 |
| CDY64698 | Canola | nucleus | 9.17 | 15.71 |
| CDX80046 | Canola | nucleus | 10.96 | 15.51 |
| CDY41557 | Canola | nucleus | 10.74 | 15.19 |
| CDY27523 | Canola | nucleus | 10.74 | 14.86 |
| CDY48016 | Canola | nucleus | 10.74 | 14.72 |
| CDY13782 | Canola | nucleus | 10.07 | 14.66 |
| CDX88432 | Canola | nucleus | 9.17 | 14.44 |
| CDX87460 | Canola | nucleus | 9.17 | 14.39 |
| CDX76950 | Canola | nucleus | 9.84 | 14.29 |
| CDX79253 | Canola | nucleus | 8.95 | 14.29 |
| CDX87594 | Canola | nucleus | 10.07 | 14.06 |
| CDY27186 | Canola | nucleus | 13.87 | 13.81 |
| CDY21356 | Canola | nucleus | 8.95 | 13.79 |
| CDX68024 | Canola | nucleus | 8.72 | 13.78 |
| CDX76015 | Canola | nucleus | 9.4 | 13.77 |
| CDX72106 | Canola | nucleus | 13.87 | 13.63 |
| CDY57580 | Canola | nucleus | 13.42 | 13.54 |
| CDY46642 | Canola | nucleus | 8.72 | 13.49 |
| CDY06947 | Canola | nucleus | 12.98 | 13.49 |
| CDY67263 | Canola | nucleus | 9.4 | 12.8 |
| CDY00446 | Canola | nucleus | 9.17 | 12.06 |
| CDX69277 | Canola | mitochondrion | 4.92 | 11.83 |
| CDY08023 | Canola | nucleus | 9.4 | 11.67 |
| CDY24657 | Canola | nucleus | 8.5 | 11.18 |
| CDX74070 | Canola | cytosol | 8.95 | 11.11 |
| CDY21399 | Canola | mitochondrion | 3.58 | 11.03 |
| CDY47382 | Canola | golgi, plastid | 10.07 | 10.82 |
| CDY15850 | Canola | nucleus | 8.72 | 10.54 |
| CDY05301 | Canola | nucleus | 8.05 | 10.26 |
| CDY13339 | Canola | mitochondrion | 3.58 | 9.52 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078DJD7 | EnsemblPlants:CDX89316 | ProteinID:CDX89316 | ProteinID:CDX89316.1 |
| InterPro:DAZAP1_RRM2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00149531001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44291 |
| PANTHER:PTHR44291:SF1 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | SignalP:SignalP-noTM |
| UniParc:UPI0004EF485A | SEG:seg | : | : | : | : |
Description
BnaA01g15770D
Coordinates
chrLK031858:-:852367..854165
Molecular Weight (calculated)
48906.8 Da
IEP (calculated)
6.875
GRAVY (calculated)
-0.494
Length
447 amino acids
Sequence
(BLAST)
(BLAST)
001: MFLLPFVFQF AQHLLLIPVF ILQEQKLESV SDLGKLFIGG ISWDTDEERL REYFSNFGDL VESVIMRDRT TGRARGFGFI VFADPSVAER VIMEKHIIDG
101: RTVEAKKAVP RDDHQQVLKR HASPMHLISS PNHGGRTKKI FVGGLPSSIT EAEFKNYFDQ FGTVTDVVVM YDHNTQRPRG FGFITFDSEE SVDIVLHKTF
201: HELNGKMVEV KRAVPKEPPQ ASVNRSSPVL GFGNNRSSGD SYFNSFAPGY SNNPGGRFSP IGSGRNAFSN FGLGSNQELS LNGNTLGFNR VPGDQYFNNA
301: SPNRYNSPIG FNRGDSAYNP SNRDLWGNSP GLNLGVSVGN IRGNWGLSDT NGYGRSVGTG SGLSALSFSG NNNNTNGFDG SIGELYRGSS VYSDSTWQQM
401: LPHQSSNELE GLSRSYGFGI GNVGSEPSAN ASEGYPGNRQ TNRGIEA
101: RTVEAKKAVP RDDHQQVLKR HASPMHLISS PNHGGRTKKI FVGGLPSSIT EAEFKNYFDQ FGTVTDVVVM YDHNTQRPRG FGFITFDSEE SVDIVLHKTF
201: HELNGKMVEV KRAVPKEPPQ ASVNRSSPVL GFGNNRSSGD SYFNSFAPGY SNNPGGRFSP IGSGRNAFSN FGLGSNQELS LNGNTLGFNR VPGDQYFNNA
301: SPNRYNSPIG FNRGDSAYNP SNRDLWGNSP GLNLGVSVGN IRGNWGLSDT NGYGRSVGTG SGLSALSFSG NNNNTNGFDG SIGELYRGSS VYSDSTWQQM
401: LPHQSSNELE GLSRSYGFGI GNVGSEPSAN ASEGYPGNRQ TNRGIEA
001: MEQKMESASD LGKLFIGGIS WDTDEERLQE YFGKYGDLVE AVIMRDRTTG RARGFGFIVF ADPSVAERVI MDKHIIDGRT VEAKKAVPRD DQQVLKRHAS
101: PMHLISPSHG GNGGGARTKK IFVGGLPSSI TEAEFKNYFD QFGTIADVVV MYDHNTQRPR GFGFITFDSE ESVDMVLHKT FHELNGKMVE VKRAVPKELS
201: STTPNRSPLI GYGNNYGVVP NRSSANSYFN SFPPGYNNNN LGSAGRFSPI GSGRNAFSSF GLGLNQELNL NSNFDGNTLG YSRIPGNQYF NSASPNRYNS
301: PIGYNRGDSA YNPSNRDLWG NRSDSSGPGW NLGVSVGNNR GNWGLSSVVS DNNGYGRSYG AGSGLSGLSF AGNTNGFDGS IGELYRGSSV YSDSTWQQSM
401: PHHQSSNELD GLSRSYGFGI DNVGSDPSAN ASEGYSGNYN VGNRQTHRGI EA
101: PMHLISPSHG GNGGGARTKK IFVGGLPSSI TEAEFKNYFD QFGTIADVVV MYDHNTQRPR GFGFITFDSE ESVDMVLHKT FHELNGKMVE VKRAVPKELS
201: STTPNRSPLI GYGNNYGVVP NRSSANSYFN SFPPGYNNNN LGSAGRFSPI GSGRNAFSSF GLGLNQELNL NSNFDGNTLG YSRIPGNQYF NSASPNRYNS
301: PIGYNRGDSA YNPSNRDLWG NRSDSSGPGW NLGVSVGNNR GNWGLSSVVS DNNGYGRSYG AGSGLSGLSF AGNTNGFDGS IGELYRGSSV YSDSTWQQSM
401: PHHQSSNELD GLSRSYGFGI DNVGSDPSAN ASEGYSGNYN VGNRQTHRGI EA
Arabidopsis Description
AT4g26650/T15N24_100 [Source:UniProtKB/TrEMBL;Acc:Q8W569]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.