Factsheet for Solyc12g014600.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076643	Potato	nucleus	97.03	89.45
Solyc10g006050.2.1	Tomato	nucleus	78.49	79.21
Solyc04g014820.2.1	Tomato	cytosol	39.59	64.55
VIT_19s0090g01660.t01	Wine grape	nucleus	69.57	63.6
KRH46297	Soybean	nucleus	67.28	61.38
KRG98573	Soybean	nucleus	67.28	61.38
KRH73860	Soybean	nucleus	65.45	59.96
KRH14284	Soybean	nucleus	64.07	58.58
Solyc07g048030.2.1	Tomato	nucleus	57.44	57.44
Solyc12g006180.1.1	Tomato	nucleus	56.75	56.62
GSMUA_Achr10P...	Banana	nucleus	56.75	56.36
Solyc11g012470.1.1	Tomato	nucleus	54.92	56.07
GSMUA_Achr10P...	Banana	nucleus	57.67	54.78
HORVU0Hr1G008280.1	Barley	nucleus	56.06	52.92
TraesCS4A01G150600.1	Wheat	nucleus	56.06	52.92
TraesCS4D01G152200.1	Wheat	nucleus	55.84	52.7
TraesCSU01G068500.1	Wheat	nucleus	55.38	52.27
Os11t0637700-01	Rice	plasma membrane	55.84	52.25
GSMUA_Achr6P10970_001	Banana	nucleus	59.5	52.0
GSMUA_Achr4P33100_001	Banana	nucleus	52.4	51.81
Os07t0584500-01	Rice	nucleus	54.92	50.85
TraesCS2B01G216600.2	Wheat	cytosol	54.69	50.74
TraesCS2D01G197500.2	Wheat	nucleus	54.23	50.43
EER97452	Sorghum	nucleus	54.23	50.32
EER96020	Sorghum	nucleus	51.26	49.23
EER98147	Sorghum	nucleus	51.03	49.23
Zm00001d007772_P001	Maize	nucleus	50.11	48.78
Bra028973.1-P	Field mustard	nucleus	48.28	48.73
Zm00001d019079_P001	Maize	cytosol	49.66	48.44
Zm00001d006704_P002	Maize	nucleus	53.55	48.35
CDY11989	Canola	nucleus	47.6	48.15
CDX94301	Canola	nucleus	48.51	47.96
AT4G26650.1	Thale cress	nucleus	49.89	47.91
CDY36753	Canola	nucleus	47.37	47.59
CDX89316	Canola	endoplasmic reticulum	47.6	46.53
Zm00001d019084_P002	Maize	nucleus	48.28	46.48
Bra026413.1-P	Field mustard	nucleus	44.39	45.86
CDX92807	Canola	nucleus	47.14	45.78
CDY46689	Canola	nucleus	47.6	44.92
Bra019094.1-P	Field mustard	nucleus	47.6	44.92
TraesCS2A01G190400.1	Wheat	plastid	54.23	44.63
CDY46690	Canola	nucleus	42.79	43.69
Zm00001d021950_P007	Maize	endoplasmic reticulum, nucleus	53.55	43.25
Zm00001d019086_P001	Maize	nucleus	51.72	42.48
AT5G55550.10	Thale cress	nucleus	48.97	42.21
OQU83904	Sorghum	nucleus	41.88	40.67
GSMUA_Achr3P02300_001	Banana	nucleus	57.44	36.97
Solyc03g005680.2.1	Tomato	nucleus	34.32	35.13
Solyc09g072790.2.1	Tomato	nucleus	30.21	33.5
Solyc09g090520.2.1	Tomato	nucleus	36.16	33.26
Solyc03g121710.2.1	Tomato	nucleus	18.99	30.86
Solyc07g045240.2.1	Tomato	nucleus	23.8	30.32
Solyc04g077520.2.1	Tomato	nucleus	23.11	29.62
Solyc02g093340.2.1	Tomato	nucleus	24.94	28.02
Solyc06g062740.1.1	Tomato	cytosol	11.44	25.38
Solyc02g090910.2.1	Tomato	nucleus	20.37	23.67
Solyc06g062730.1.1	Tomato	nucleus	18.54	22.07
Solyc02g064540.1.1	Tomato	nucleus	18.54	21.89
Solyc12g035280.1.1	Tomato	cytosol, nucleus, plastid	18.08	21.29
Solyc11g044470.1.1	Tomato	mitochondrion, nucleus, plastid	9.61	16.09
Solyc02g021560.2.1	Tomato	nucleus	15.1	15.31
Solyc10g081330.1.1	Tomato	nucleus	13.73	14.39
Solyc04g082770.2.1	Tomato	cytosol, extracellular, nucleus, plastid	7.55	13.69
Solyc04g049920.2.1	Tomato	nucleus	7.09	12.86
Solyc04g011560.2.1	Tomato	nucleus	13.5	12.55
Solyc02g082270.2.1	Tomato	nucleus	7.32	11.35
Solyc04g074310.2.1	Tomato	nucleus	7.55	11.26
Solyc12g014210.1.1	Tomato	nucleus	8.47	11.04
Solyc01g008970.2.1	Tomato	nucleus	8.7	10.11

Protein Annotations

EnsemblPlants:Solyc12g014600.1.1	EnsemblPlantsGene:Solyc12g014600.1	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:DAZAP1_RRM2	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR44291	PANTHER:PTHR44291:SF1	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000276A96C	UniProt:K4DCZ5	MapMan:35.1	:

Description

No Description!

Coordinates

chr12:-:5600467..5603988

Molecular Weight (calculated)

46014.7 Da

IEP (calculated)

9.652

GRAVY (calculated)

-0.533

Length

437 amino acids

Sequence
(BLAST)

001: MRDRNTGRAR GFGFVVFANP AVAERVVNEK HIIDGRTVEA KKAVPRDDQQ IINRNNSSIH GSPGPGRTKK IFVGGLASTV TESDFKTYFD QFGTITDVVV
101: MYDHNTQRPR GFGFITYDSE DAVDRALYKT YHDLNGKMIE VKRAVPKELS PGPNRSPFNG FNYGLGRVNN FLNNYAQGYS LGSIGGYGVR MDGRFSPVAS
201: GRTSFSQFSS PAYGMGVNLD PALSPTFAGA SNFSNNLGYG RALNPYFTGN SSRYTTPIGY NTGSNRGDSL LSSPTRNVWG NGGLNSSPGP GSSGSFLGSG
301: TGGYGVFGNN GANWGSSAVS APVGSASGYG GRNVGFRNGG RSYGLGSGGL ARSNAAGGVP TSFAASGGAY EGSYGDLYRS GSMYGDSTWQ TVSSDMEGSN
401: TFGYGLENPA DDSAKDSENY IGNYSIANRQ SNRGIAA

Best Arabidopsis Sequence Match ( AT3G07810.1 )
(BLAST)

001: MQSDNGKLFI GGISWDTNEE RLKEYFSSFG EVIEAVILKD RTTGRARGFG FVVFADPAVA EIVITEKHNI DGRLVEAKKA VPRDDQNMVN RSNSSSIQGS
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GIAT

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JFN7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.