Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400012586 | Potato | nucleus | 93.84 | 93.02 |
| Bra035441.1-P | Field mustard | mitochondrion, nucleus, plastid | 12.61 | 55.13 |
| KRH52137 | Soybean | nucleus | 48.97 | 44.18 |
| KRH61448 | Soybean | nucleus | 47.8 | 42.45 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 42.82 | 42.2 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 42.23 | 39.67 |
| Bra027860.1-P | Field mustard | cytosol, nucleus, peroxisome | 41.94 | 39.29 |
| AT1G58470.2 | Thale cress | cytosol, nucleus, plastid | 41.35 | 39.17 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 41.35 | 38.74 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 40.76 | 38.29 |
| Solyc06g062740.1.1 | Tomato | cytosol | 19.65 | 34.01 |
| Solyc04g014820.2.1 | Tomato | cytosol | 26.39 | 33.58 |
| Solyc03g121710.2.1 | Tomato | nucleus | 26.1 | 33.09 |
| Solyc03g005680.2.1 | Tomato | nucleus | 38.71 | 30.91 |
| Solyc09g072790.2.1 | Tomato | nucleus | 34.6 | 29.95 |
| VIT_18s0001g08640.t01 | Wine grape | nucleus | 41.06 | 29.72 |
| Solyc07g045240.2.1 | Tomato | nucleus | 29.62 | 29.45 |
| Solyc09g090520.2.1 | Tomato | nucleus | 39.3 | 28.21 |
| Solyc02g093340.2.1 | Tomato | nucleus | 29.91 | 26.22 |
| Solyc02g064540.1.1 | Tomato | nucleus | 27.86 | 25.68 |
| Solyc06g062730.1.1 | Tomato | nucleus | 26.98 | 25.07 |
| Solyc11g012470.1.1 | Tomato | nucleus | 30.21 | 24.07 |
| Solyc10g006050.2.1 | Tomato | nucleus | 30.21 | 23.79 |
| Solyc07g048030.2.1 | Tomato | nucleus | 30.21 | 23.57 |
| Solyc12g006180.1.1 | Tomato | nucleus | 30.21 | 23.52 |
| Solyc12g014600.1.1 | Tomato | nucleus | 29.62 | 23.11 |
| Solyc02g090910.2.1 | Tomato | nucleus | 24.93 | 22.61 |
| Solyc11g044470.1.1 | Tomato | mitochondrion, nucleus, plastid | 16.13 | 21.07 |
| Solyc12g035280.1.1 | Tomato | cytosol, nucleus, plastid | 21.99 | 20.22 |
| Solyc04g049920.2.1 | Tomato | nucleus | 12.61 | 17.84 |
| Solyc02g021560.2.1 | Tomato | nucleus | 19.94 | 15.78 |
| Solyc04g082770.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 10.85 | 15.35 |
| Solyc02g082270.2.1 | Tomato | nucleus | 12.02 | 14.54 |
| Solyc04g011560.2.1 | Tomato | nucleus | 19.06 | 13.83 |
| Solyc10g081330.1.1 | Tomato | nucleus | 16.13 | 13.19 |
| Solyc04g074310.2.1 | Tomato | nucleus | 10.56 | 12.29 |
| Solyc12g014210.1.1 | Tomato | nucleus | 12.02 | 12.24 |
| Solyc01g008970.2.1 | Tomato | nucleus | 13.49 | 12.23 |
Protein Annotations
| EnsemblPlants:Solyc04g077520.2.1 | EnsemblPlantsGene:Solyc04g077520.2 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003727 | GO:GO:0003729 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR44291 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0002766659 | UniProt:K4BUI9 | MapMan:35.1 | : |
Description
RNA-binding protein 1 [Source:Projected from Arabidopsis thaliana (AT1G58470) UniProtKB/Swiss-Prot;Acc:Q9C652]
Coordinates
chr4:-:62477053..62478767
Molecular Weight (calculated)
37097.4 Da
IEP (calculated)
7.754
GRAVY (calculated)
-0.495
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDLDKSKLF CGGIPRDTSD EMLKDHFSKY GTVVSSVIAK DRETGRPRGF AFVSFTDPSA VDLALQDTHE ILGRMVEVKK AIPRSEQHQN QLLNSGGLNR
101: NSRTDGRSND QFRTKKIFVG GLSASLNQEE FKSYFERFGN ITDVVVMHDN VTHRPRGFGF ITFDSEDAVE EVMQEPFHEL SGKFVEVKKA IPKDGSSNSG
201: NSYHSRIGNG NGSNYNNIYQ QGMYPSYSPS YVYSPGPISG YGGVAEYPYG VRTFGGGYPI GAYPGVGYGI TSLVPRGPWN NPTMTGFRGG PLSYGNAGGF
301: YPAYINSGVG VMNMATNGYG GILGAGINEK LGQVSVRDAR V
101: NSRTDGRSND QFRTKKIFVG GLSASLNQEE FKSYFERFGN ITDVVVMHDN VTHRPRGFGF ITFDSEDAVE EVMQEPFHEL SGKFVEVKKA IPKDGSSNSG
201: NSYHSRIGNG NGSNYNNIYQ QGMYPSYSPS YVYSPGPISG YGGVAEYPYG VRTFGGGYPI GAYPGVGYGI TSLVPRGPWN NPTMTGFRGG PLSYGNAGGF
301: YPAYINSGVG VMNMATNGYG GILGAGINEK LGQVSVRDAR V
001: MDYDRYKLFV GGIAKETSEE ALKQYFSRYG AVLEAVVAKE KVTGKPRGFG FVRFANDCDV VKALRDTHFI LGKPVDVRKA IRKHELYQQP FSMQFLERKV
101: QQMNGGLREM SSNGVTSRTK KIFVGGLSSN TTEEEFKSYF ERFGRTTDVV VMHDGVTNRP RGFGFVTYDS EDSVEVVMQS NFHELSDKRV EVKRAIPKEG
201: IQSNNGNAVN IPPSYSSFQA TPYVPEQNGY GMVLQFPPPV FGYHHNVQAV QYPYGYQFTA QVANVSWNNP IMQPTGFYCA PPHPTPPPTN NLGYIQYMNG
301: FDLSGTNISG YNPLAWPVTG DAAGALIHQF VDLKLDVHSQ AHQRMNGGNM GIPLQNGTYI
101: QQMNGGLREM SSNGVTSRTK KIFVGGLSSN TTEEEFKSYF ERFGRTTDVV VMHDGVTNRP RGFGFVTYDS EDSVEVVMQS NFHELSDKRV EVKRAIPKEG
201: IQSNNGNAVN IPPSYSSFQA TPYVPEQNGY GMVLQFPPPV FGYHHNVQAV QYPYGYQFTA QVANVSWNNP IMQPTGFYCA PPHPTPPPTN NLGYIQYMNG
301: FDLSGTNISG YNPLAWPVTG DAAGALIHQF VDLKLDVHSQ AHQRMNGGNM GIPLQNGTYI
Arabidopsis Description
RBP1RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C652]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.